4.6 Article

A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Variation in Transcription Factor Binding Among Humans

Maya Kasowski et al.

SCIENCE (2010)

Article Biochemical Research Methods

High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions

Phaedra Agius et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

A Data Integration Framework for Prediction of Transcription Factor Targets A BCL6 Case Study

Matti Nykter et al.

CHALLENGES OF SYSTEMS BIOLOGY: COMMUNITY EFFORTS TO HARNESS BIOLOGICAL COMPLEXITY (2009)

Article Biotechnology & Applied Microbiology

Lessons from the DREAM2 Challenges A Community Effort to Assess Biological Network Inference

Gustavo Stolovitzky et al.

CHALLENGES OF SYSTEMS BIOLOGY: COMMUNITY EFFORTS TO HARNESS BIOLOGICAL COMPLEXITY (2009)

Article Biochemical Research Methods

Design of compact, universal DNA microarrays for protein binding microarray experiments

Anthony A. Philippakis et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2008)

Article Multidisciplinary Sciences

Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources

Harri Lahdesmaki et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

Genome-wide mapping of in vivo protein-DNA interactions

David S. Johnson et al.

SCIENCE (2007)

Article Biotechnology & Applied Microbiology

Quantifying similarity between motifs

Shobhit Gupta et al.

GENOME BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

Michael F. Berger et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemical Research Methods

Design of a combinatorial DNA microarray for protein-DNA interaction studies

Julian Mintseris et al.

BMC BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

A genomic code for nucleosome positioning

Eran Segal et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

Extensive low-affinity transcriptional interactions in the yeast genome

Amos Tanay

GENOME RESEARCH (2006)

Article Biochemical Research Methods

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE

Barrett C. Foat et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

Integrated assessment and prediction of transcription factor binding

Andreas Beyer et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Review Oncology

ETS transcription factors and their emerging roles in human cancer

A Seth et al.

EUROPEAN JOURNAL OF CANCER (2005)

Article Biochemistry & Molecular Biology

DIP-chip: Rapid and accurate determination of DNA-binding specificity

X Liu et al.

GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

A Sandelin et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Additivity in protein-DNA interactions: how good an approximation is it?

PV Benos et al.

NUCLEIC ACIDS RESEARCH (2002)

Review Oncology

Transcription factors as targets for cancer therapy

JE Darnell

NATURE REVIEWS CANCER (2002)

Article Multidisciplinary Sciences

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

ML Bulyk et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Biochemical Research Methods

A model for measurement error for gene expression arrays

DM Rocke et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2001)

Article Multidisciplinary Sciences

Genome-wide location and function of DNA binding proteins

B Ren et al.

SCIENCE (2000)

Article Biochemistry & Molecular Biology

Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation

V Orlando

TRENDS IN BIOCHEMICAL SCIENCES (2000)

Article Biochemical Research Methods

DNA binding sites: representation and discovery

GD Stormo

BIOINFORMATICS (2000)

Article Biochemistry & Molecular Biology

TRANSFAC: an integrated system for gene expression regulation

E Wingender et al.

NUCLEIC ACIDS RESEARCH (2000)