相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The Electrostatics of VDAC: Implications for Selectivity and Gating
Om P. Choudhary et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
Modeling Membrane Deformations and Lipid Demixing upon Protein-Membrane Interaction: The BAR Dimer Adsorption
George Khelashvili et al.
BIOPHYSICAL JOURNAL (2009)
CHARMM: The Biomolecular Simulation Program
B. R. Brooks et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Structure and hydration of membranes embedded with voltage-sensing domains
Dmitriy Krepkiy et al.
NATURE (2009)
A multiscale model linking ion-channel molecular dynamics and electrostatics to the cardiac action potential
Jonathan R. Silva et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Double bilayers and transmembrane gradients: A molecular dynamics study of a highly charged peptide
Elizabeth J. Denning et al.
BIOPHYSICAL JOURNAL (2008)
Protein diffusion on charged membranes: A dynamic mean-field model describes time evolution and lipid reorganization
George Khelashvili et al.
BIOPHYSICAL JOURNAL (2008)
Long-pore Electrostatics in Inward-rectifier Potassium Channels
Janice L. Robertson et al.
JOURNAL OF GENERAL PHYSIOLOGY (2008)
A continuum method for determining membrane protein insertion energies and the problem of charged residues
Seungho Choe et al.
JOURNAL OF GENERAL PHYSIOLOGY (2008)
X-ray structure of a prokaryotic pentameric ligand-gated ion channel
Ricarda J. C. Hilf et al.
NATURE (2008)
PBEQ-Solver for online visualization of electrostatic potential of biomolecules
Sunhwan Jo et al.
NUCLEIC ACIDS RESEARCH (2008)
The crystal structure of mouse VDAC1 at 2.3 Å resolution reveals mechanistic insights into metabolite gating
Rachna Ujwal et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Highly accurate biomolecular electrostatics in continuum dielectric environments
Y. C. Zhou et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2008)
Closing in on the resting state of the shaker K+ channel
Medha M. Pathak et al.
NEURON (2007)
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations
Todd J. Dolinsky et al.
NUCLEIC ACIDS RESEARCH (2007)
Hydrophobic association of α-helices, steric dewetting, and enthalpic barriers to protein folding
Justin L. MacCallum et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
A generalized Born implicit-membrane representation compared to experimental insertion free energies
Martin B. Ulmschneider et al.
BIOPHYSICAL JOURNAL (2007)
Optimizing the Poisson dielectric boundary with explicit solvent forces and energies: Lessons learned with atom-centered dielectric functions
Jessica M. J. Swanson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2007)
Calculating the free energy of association of transmembrane helices
Jinming Zhang et al.
BIOPHYSICAL JOURNAL (2006)
Membrane protein dynamics and detergent interactions within a crystal:: A simulation study of OmpA
Peter J. Bond et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
OPM: Orientations of proteins in membranes database
MA Lomize et al.
BIOINFORMATICS (2006)
Molecular dynamics simulations of large integral membrane proteins with an implicit membrane model
S Tanizaki et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2006)
Electrostatics of the intracellular vestibule of K+ channels
V Jogini et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
The pore helix dipole has a minor role in inward rectifier channel function
FC Chatelain et al.
NEURON (2005)
Gating charge displacement in voltage-gated ion channels involves limited transmembrane movement
B Chanda et al.
NATURE (2005)
A generalized Born formalism for heterogeneous dielectric environments: Application to the implicit modeling of biological membranes
S Tanizaki et al.
JOURNAL OF CHEMICAL PHYSICS (2005)
Implicit solvation based on generalized Born theory in different dielectric environments
M Feig et al.
JOURNAL OF CHEMICAL PHYSICS (2004)
A quantitative assessment of models for voltage-dependent gating of ion channels
M Grabe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Not ions alone: Barriers to ion permeation in nanopores and channels
O Beckstein et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Electrostatics of ion stabilization in a ClC chloride channel homologue from Escherichia coli
JD Faraldo-Gómez et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Evaluation of a initio charge determination methods for use in continuum solvation calculations
DF Green et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2003)
An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins
W Im et al.
BIOPHYSICAL JOURNAL (2003)
Probing protein electrostatics with a synthetic fluorescent amino acid
BE Cohen et al.
SCIENCE (2002)
The open pore conformation of potassium channels
YX Jiang et al.
NATURE (2002)
Control of the selectivity of the aquaporin water channel family by global orientational tuning
E Tajkhorshid et al.
SCIENCE (2002)
Hydrophobic matching mechanism investigated by molecular dynamics simulations
HI Petrache et al.
LANGMUIR (2002)
Imaging the electrostatic potential of transmembrane channels: Atomic probe microscopy of OmpF porin
A Philippsen et al.
BIOPHYSICAL JOURNAL (2002)
The role of electrostatic interactions in the regulation of the membrane association of G protein βγ heterodimers
D Murray et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Energetics of ion conduction through the K+ channel
S Bernèche et al.
NATURE (2001)
What are the dielectric constants of proteins and how to validate electrostatic models?
CN Schutz et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2001)
Electrostatics of nanosystems: Application to microtubules and the ribosome
NA Baker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
A smooth permittivity function for Poisson-Boltzmann solvation methods
JA Grant et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2001)
Ion channels, permeation, and electrostatics:: Insight into the function of KcsA
B Roux et al.
BIOCHEMISTRY (2000)
Anchoring of a monotopic membrane protein: the binding of prostaglandin H-2 synthase-1 to the surface of a phospholipid bilayer
M Nina et al.
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2000)
分享论文
