4.6 Review

Application of metagenomics in the human gut microbiome

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biology

Geographical variation of human gut microbial composition

Taichi A. Suzuki et al.

BIOLOGY LETTERS (2014)

Article Oncology

Non-invasive fecal metabonomic detection of colorectal cancer

Lee Cheng Phua et al.

CANCER BIOLOGY & THERAPY (2014)

Review Oncology

Obesity and Cancer: A Gut Microbial Connection

Naoko Ohtani et al.

CANCER RESEARCH (2014)

Article Allergy

Low gut microbiota diversity in early infancy precedes asthma at school age

T. R. Abrahamsson et al.

CLINICAL AND EXPERIMENTAL ALLERGY (2014)

Article Endocrinology & Metabolism

Aberrant gut microbiota composition at the onset of type 1 diabetes in young children

Marcus C. de Goffau et al.

DIABETOLOGIA (2014)

Editorial Material Gastroenterology & Hepatology

The Gut Microbiome in Health and Disease INTRODUCTION

Chung Owyang et al.

GASTROENTEROLOGY (2014)

Article Gastroenterology & Hepatology

Microbiota and diabetes: an evolving relationship

Herbert Tilg et al.

Article Microbiology

Functional Metabolic Map of Faecalibacterium prausnitzii, a Beneficial Human Gut Microbe

Almut Heinken et al.

JOURNAL OF BACTERIOLOGY (2014)

Editorial Material Endocrinology & Metabolism

Gut Microbiome, Obesity-Related Comorbidities, and Low-Grade Chronic Inflammation

Giovanni Tarantino

JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM (2014)

Article Gastroenterology & Hepatology

Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity

Anne Vrieze et al.

JOURNAL OF HEPATOLOGY (2014)

Review Urology & Nephrology

The Gut Microbiome, Kidney Disease, and Targeted Interventions

Ali Ramezani et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2014)

Review Endocrinology & Metabolism

Minireview: Gut Microbiota: The Neglected Endocrine Organ

Gerard Clarke et al.

MOLECULAR ENDOCRINOLOGY (2014)

Article Multidisciplinary Sciences

Diet rapidly and reproducibly alters the human gut microbiome

Lawrence A. David et al.

NATURE (2014)

Article Multidisciplinary Sciences

Alterations of the human gut microbiome in liver cirrhosis

Nan Qin et al.

NATURE (2014)

Article Multidisciplinary Sciences

Persistent gut microbiota immaturity in malnourished Bangladeshi children

Sathish Subramanian et al.

NATURE (2014)

Article Multidisciplinary Sciences

Dynamics and associations of microbial community types across the human body

Tao Ding et al.

NATURE (2014)

Article Biotechnology & Applied Microbiology

An integrated catalog of reference genes in the human gut microbiome

Junhua Li et al.

NATURE BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

H. Bjorn Nielsen et al.

NATURE BIOTECHNOLOGY (2014)

Editorial Material Endocrinology & Metabolism

METABOLISM IN 2013 The gut microbiota manages host metabolism

Patrice D. Cani

NATURE REVIEWS ENDOCRINOLOGY (2014)

Article Gastroenterology & Hepatology

Understanding gut microbiota in new-onset Crohn's disease

Katrina Ray

Nature Reviews Gastroenterology & Hepatology (2014)

Editorial Material Microbiology

Your gut microbiota are what you eat

Claire Chewapreecha

NATURE REVIEWS MICROBIOLOGY (2014)

Editorial Material Neurosciences

NEURODEVELOPMENTAL DISORDERS The gut-microbiome-brain connection

Monica Hoyos Flight

NATURE REVIEWS NEUROSCIENCE (2014)

Article Multidisciplinary Sciences

Relating the metatranscriptome and metagenome of the human gut

Eric A. Franzosa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Gastroenterology & Hepatology

Overgrowth of the indigenous gut microbiome and irritable bowel syndrome

William Bye et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2014)

Article Gastroenterology & Hepatology

Inflammation and colorectal cancer, when microbiota-host mutualism breaks

Marco Candela et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2014)

Article Gastroenterology & Hepatology

Role of gut microbiota and Toll-like receptors in nonalcoholic fatty liver disease

Kouichi Miura et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2014)

Article Nutrition & Dietetics

Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans

Junhai Ou et al.

AMERICAN JOURNAL OF CLINICAL NUTRITION (2013)

Article Biotechnology & Applied Microbiology

Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing

Suparna Mitra et al.

BMC GENOMICS (2013)

Review Microbiology

Human intestinal metagenomics: state of the art and future

Herve M. Blottiere et al.

CURRENT OPINION IN MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Country-specific antibiotic use practices impact the human gut resistome

Kristoffer Forslund et al.

GENOME RESEARCH (2013)

Article Gastroenterology & Hepatology

A metagenomic insight into our gut's microbiome

Patricia Lepage et al.

Article Biochemical Research Methods

A method for purifying high quality and high yield plasmid DNA for metagenomic and deep sequencing approaches

Aya Brown Kav et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2013)

Article Oncology

Human Gut Microbiome and Risk for Colorectal Cancer

Jiyoung Ahn et al.

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2013)

Article Multidisciplinary Sciences

Richness of human gut microbiome correlates with metabolic markers

Emmanuelle Le Chatelier et al.

NATURE (2013)

Article Multidisciplinary Sciences

Bacterial colonization factors control specificity and stability of the gut microbiota

S. Melanie Lee et al.

NATURE (2013)

Article Multidisciplinary Sciences

Gut metagenome in European women with normal, impaired and diabetic glucose control

Fredrik H. Karlsson et al.

NATURE (2013)

Article Biotechnology & Applied Microbiology

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

Mads Albertsen et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

Metagenomic species profiling using universal phylogenetic marker genes

Shinichi Sunagawa et al.

NATURE METHODS (2013)

Review Microbiology

The gut microbiota - masters of host development and physiology

Felix Sommer et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Editorial Material Microbiology

The microbiome explored: recent insights and future challenges

Martin Blaser et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Multidisciplinary Sciences

Microbiome Analysis of Stool Samples from African Americans with Colon Polyps

Hassan Brim et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

Pediatric Fecal Microbiota Harbor Diverse and Novel Antibiotic Resistance Genes

Aimee M. Moore et al.

PLOS ONE (2013)

Review Pharmacology & Pharmacy

Ageing and gut microbes: Perspectives for health maintenance and longevity

Elena Biagi et al.

PHARMACOLOGICAL RESEARCH (2013)

Article Multidisciplinary Sciences

The Long-Term Stability of the Human Gut Microbiota

Jeremiah J. Faith et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

The Intestinal Microbiota Modulates the Anticancer Immune Effects of Cyclophosphamide

Sophie Viaud et al.

SCIENCE (2013)

Review Biochemistry & Molecular Biology

Microbiota impact on the epigenetic regulation of colorectal cancer

Tao Yang et al.

TRENDS IN MOLECULAR MEDICINE (2013)

Article Multidisciplinary Sciences

Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota

Yongfei Hu et al.

NATURE COMMUNICATIONS (2013)

Article Multidisciplinary Sciences

Human gut microbiota community structures in urban and rural populations in Russia

Alexander V. Tyakht et al.

NATURE COMMUNICATIONS (2013)

Review Biochemistry & Molecular Biology

The Impact of the Gut Microbiota on Human Health: An Integrative View

Jose C. Clemente et al.

Article Allergy

Low diversity of the gut microbiota in infants with atopic eczema

Thomas R. Abrahamsson et al.

JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2012)

Article Multidisciplinary Sciences

A framework for human microbiome research

Barbara A. Methe et al.

NATURE (2012)

Article Multidisciplinary Sciences

Gut microbiota composition correlates with diet and health in the elderly

Marcus J. Claesson et al.

NATURE (2012)

Article Multidisciplinary Sciences

A metagenome-wide association study of gut microbiota in type 2 diabetes

Junjie Qin et al.

NATURE (2012)

Review Multidisciplinary Sciences

Reciprocal interactions of the intestinal microbiota and immune system

Craig L. Maynard et al.

NATURE (2012)

Review Multidisciplinary Sciences

Functional interactions between the gut microbiota and host metabolism

Valentina Tremaroli et al.

NATURE (2012)

Article Multidisciplinary Sciences

Structure, function and diversity of the healthy human microbiome

Curtis Huttenhower et al.

NATURE (2012)

Review Multidisciplinary Sciences

Genomic approaches to studying the human microbiota

George M. Weinstock

NATURE (2012)

Article Multidisciplinary Sciences

Human gut microbiome viewed across age and geography

Tanya Yatsunenko et al.

NATURE (2012)

Article Gastroenterology & Hepatology

Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome

I. M. Carroll et al.

NEUROGASTROENTEROLOGY AND MOTILITY (2012)

Article Multidisciplinary Sciences

Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae

Baerbel Stecher et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Symptomatic atherosclerosis is associated with an altered gut metagenome

Fredrik H. Karlsson et al.

NATURE COMMUNICATIONS (2012)

Editorial Material Biochemistry & Molecular Biology

The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome

Dirk Gevers et al.

PLOS BIOLOGY (2012)

Review Biotechnology & Applied Microbiology

Metagenomic Analyses: Past and Future Trends

Carola Simon et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Gastroenterology & Hepatology

Characterization of Fecal Microbial Communities in Patients with Liver Cirrhosis

Yanfei Chen et al.

HEPATOLOGY (2011)

Article Biotechnology & Applied Microbiology

Identification of NF-kappa B Modulation Capabilities within Human Intestinal Commensal Bacteria

Omar Lakhdari et al.

JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY (2011)

Article Multidisciplinary Sciences

Ecology drives a global network of gene exchange connecting the human microbiome

Chris S. Smillie et al.

NATURE (2011)

Article Multidisciplinary Sciences

Enterotypes of the human gut microbiome

Manimozhiyan Arumugam et al.

NATURE (2011)

Article Multidisciplinary Sciences

Metatranscriptomic Approach to Analyze the Functional Human Gut Microbiota

Maria Jose Gosalbes et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

A metagenomic β-glucuronidase uncovers a core adaptive function of the human intestinal microbiome

Karine Gloux et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Succession of microbial consortia in the developing infant gut microbiome

Jeremy E. Koenig et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

Gary D. Wu et al.

SCIENCE (2011)

Article Biochemical Research Methods

Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes

Peter J. Turnbaugh et al.

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2010)

Article Gastroenterology & Hepatology

The intestinal microbiota in inflammatory bowel diseases: time to connect with the host

Harry Sokol et al.

CURRENT OPINION IN GASTROENTEROLOGY (2010)

Article Biochemistry & Molecular Biology

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

Lena Tasse et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

Viruses in the faecal microbiota of monozygotic twins and their mothers

Alejandro Reyes et al.

NATURE (2010)

Article Multidisciplinary Sciences

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

Jan-Hendrik Hehemann et al.

NATURE (2010)

Article Multidisciplinary Sciences

A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin et al.

NATURE (2010)

Review Biotechnology & Applied Microbiology

Bioprospecting metagenomes: glycosyl hydrolases for converting biomass

Luen-Luen Li et al.

BIOTECHNOLOGY FOR BIOFUELS (2009)

Article Ecology

Shotgun metaproteomics of the human distal gut microbiota

Nathan C. Verberkmoes et al.

ISME JOURNAL (2009)

Article Neurosciences

The core gut microbiome, energy balance and obesity

Peter J. Turnbaugh et al.

JOURNAL OF PHYSIOLOGY-LONDON (2009)

Article Multidisciplinary Sciences

A core gut microbiome in obese and lean twins

Peter J. Turnbaugh et al.

NATURE (2009)

Review Biotechnology & Applied Microbiology

The challenges of sequencing by synthesis

Carl W. Fuller et al.

NATURE BIOTECHNOLOGY (2009)

Article Infectious Diseases

Distribution of Tetracycline and Erythromycin Resistance Genes Among Human Oral and Fecal Metagenomic DNA

Lorna A. Seville et al.

MICROBIAL DRUG RESISTANCE (2009)

Article Multidisciplinary Sciences

Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease

Janet Jansson et al.

PLOS ONE (2009)

Article Multidisciplinary Sciences

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

Morten O. A. Sommer et al.

SCIENCE (2009)

Review Multidisciplinary Sciences

Antibiotics for Emerging Pathogens

Michael A. Fischbach et al.

SCIENCE (2009)

Article Biochemical Research Methods

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies

Alexandra M. Schnoes et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Review Biotechnology & Applied Microbiology

Next-generation DNA sequencing

Jay Shendure et al.

NATURE BIOTECHNOLOGY (2008)

Article Multidisciplinary Sciences

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome

Brian V. Jones et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biotechnology & Applied Microbiology

Development of high-throughput phenotyping of metagenomic clones from the human gut microbiome for modulation of eukaryotic cell growth

Karine Gloux et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Biochemistry & Molecular Biology

Molecular mechanisms of antibacterial multidrug resistance

Michael N. Alekshun et al.

Article Biochemical Research Methods

Rapid and noninvasive metabonomic characterization of inflammatory bowel disease

Julian R. Marchesi et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biotechnology & Applied Microbiology

Prediction of effective genome size in metagenomic samples

Jeroen Raes et al.

GENOME BIOLOGY (2007)

Article Biochemical Research Methods

Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome

Brian V. Jones et al.

NATURE METHODS (2007)

Article Biochemistry & Molecular Biology

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

J. R. Cole et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Multidisciplinary Sciences

Microbial ecology - Human gut microbes associated with obesity

Ruth E. Ley et al.

NATURE (2006)

Review Infectious Diseases

The worldwide emergence of plasmid-mediated quinolone resistance

Ari Robicsek et al.

LANCET INFECTIOUS DISEASES (2006)

Article Multidisciplinary Sciences

Metagenomic analysis of the human distal gut microbiome

Steven R. Gill et al.

SCIENCE (2006)

Article Multidisciplinary Sciences

Sampling the antibiotic resistome

VM D'Costa et al.

SCIENCE (2006)

Article Multidisciplinary Sciences

Diversity of the human intestinal microbial flora

PB Eckburg et al.

SCIENCE (2005)

Review Microbiology

Gut microorganisms, mammalian metabolism and personalized health care

JK Nicholson et al.

NATURE REVIEWS MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Comparative metagenomics of microbial communities

SG Tringe et al.

SCIENCE (2005)

Article Multidisciplinary Sciences

Environmental genome shotgun sequencing of the Sargasso Sea

JC Venter et al.

SCIENCE (2004)

Review Biochemistry & Molecular Biology

Human intestinal bacteria as reservoirs for antibiotic resistance genes

AA Salyers et al.

TRENDS IN MICROBIOLOGY (2004)

Article Microbiology

Quantifying the accessibility of the metagenome by random expression cloning techniques

EM Gabor et al.

ENVIRONMENTAL MICROBIOLOGY (2004)

Review Microbiology

Metagenomics: Application of genomics to uncultured microorganisms

J Handelsman

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)