4.4 Article

Analysis of Expressed Sequence Tags (ESTs) Collected from the Inflorescence of Chrysanthemum

期刊

PLANT MOLECULAR BIOLOGY REPORTER
卷 27, 期 4, 页码 503-510

出版社

SPRINGER
DOI: 10.1007/s11105-009-0103-6

关键词

Expressed sequence tags (ESTs); Transcripts; Inflorescence; Chrysanthemum

资金

  1. Prof. Hiroaki Kodama of Graduate School of Horticulture
  2. Chiba University, Japan
  3. Beijing Genomics Institute (BGI) for EST
  4. New Century Excellent Talents in University of Chinese Ministry of Education [NCET-060489]
  5. National Natural Science Foundation of China [30872064]
  6. China Postdoctoral Science Foundation [20070411058]
  7. National Key Technology R& D Program of the Ministry of Science and Technology of the People's Republic of China [2006BAD01A1806]

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The expressed sequence tags (ESTs) described in this report were obtained from the inflorescence of chrysanthemum. A complementary DNA (cDNA) library was constructed from the inflorescence of the anemone-type chrysanthemum 'Zhongshanzigui'. In total, 7,307 cDNA clones were sequenced, representing 4,563 unique sequences and consisting of 3,567 singletons and 996 contigs. Comparison to the GenBank nonredundant (nr) database revealed 57.2% (2,608/4,563) chrysanthemum sequences with homology to genes of known function of other organisms. Approximately 26.67% (1,217/4,563) of the unigenes were clustered into 23 categories by the clusters of orthologous group analysis: Most of the identified transcripts were genes related to metabolism, subcellular localization, protein biosynthesis, and cell wall structure. The ESTs presented here will be a valuable addition to floral development transcriptional database.

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