相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。PyMC: Bayesian Stochastic Modelling inPython
Anand Patil et al.
Journal of Statistical Software (2015)
Helical Propensity in an Intrinsically Disordered Protein Accelerates Ligand Binding
Vytautas Iesmantavicius et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)
Bayesian Energy Landscape Tilting: Towards Concordant Models of Molecular Ensembles
Kyle A. Beauchamp et al.
BIOPHYSICAL JOURNAL (2014)
Efficient and Minimal Method to Bias Molecular Simulations with Experimental Data
Andrew D. White et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)
Probabilistic Determination of Native State Ensembles of Proteins
Simon Olsson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins
Mihaly Varadi et al.
NUCLEIC ACIDS RESEARCH (2014)
Testing the validity of ensemble descriptions of intrinsically disordered proteins
Malene Ringkjobing Jensen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Combining Experiments and Simulations Using the Maximum Entropy Principle
Wouter Boomsma et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
On the statistical equivalence of restrained-ensemble simulations with the maximum entropy method
Benoit Roux et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Molecular dynamics simulations with replica-averaged structural restraints generate structural ensembles according to the maximum entropy principle
Andrea Cavalli et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Role of Prion Disease-Linked Mutations in the Intrinsically Disordered N-Terminal Domain of the Prion Protein
Xiaojing Cong et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Recovering a Representative Conformational Ensemble from Underdetermined Macromolecular Structural Data
Konstantin Berlin et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
Ensemble-Based Interpretations of NMR Structural Data to Describe Protein Internal Dynamics
Annamaria F. Angyan et al.
MOLECULES (2013)
Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
Simon Olsson et al.
PLOS ONE (2013)
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding
Wei-Lun Hsu et al.
PROTEIN SCIENCE (2013)
Principles of maximum entropy and maximum caliber in statistical physics
Steve Presse et al.
REVIEWS OF MODERN PHYSICS (2013)
Flexible-meccano: a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables
Valery Ozenne et al.
BIOINFORMATICS (2012)
On the Use of Experimental Observations to Bias Simulated Ensembles
Jed W. Pitera et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Understanding the structural ensembles of a highly extended disordered protein
Gary W. Daughdrill et al.
MOLECULAR BIOSYSTEMS (2012)
Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy
Robert Schneider et al.
MOLECULAR BIOSYSTEMS (2012)
Fuzziness: linking regulation to protein dynamics
Monika Fuxreiter
MOLECULAR BIOSYSTEMS (2012)
Ensemble modeling of protein disordered states: Experimental restraint contributions and validation
Joseph A. Marsh et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2012)
Distinct phases of free α-synuclein-A Monte Carlo study
Sigurour Aegir Jonsson et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2012)
Constructing ensembles for intrinsically disordered proteins
Charles K. Fisher et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)
Intrinsically disordered proteins: regulation and disease
M. Madan Babu et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)
Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles
R. Bryn Fenwick et al.
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2011)
Novel Strategies for Drug Discovery Based on Intrinsically Disordered Proteins (IDPs)
Jihua Wang et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2011)
Generative probabilistic models extend the scope of inferential structure determination
Simon Olsson et al.
JOURNAL OF MAGNETIC RESONANCE (2011)
SAXS Ensemble Refinement of ESCRT-III CHMP3 Conformational Transitions
Bartosz Rozycki et al.
STRUCTURE (2011)
Refinement of Ensembles Describing Unstructured Proteins Using NMR Residual Dipolar Couplings
Santi Esteban-Martin et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)
Modeling Intrinsically Disordered Proteins with Bayesian Statistics
Charles K. Fisher et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)
Net charge per residue modulates conformational ensembles of intrinsically disordered proteins
Albert H. Mao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
ABSINTH: A New Continuum Solvation Model for Simulations of Polypeptides in Aqueous Solutions
Andreas Vitalis et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Quantitative Description of Backbone Conformational Sampling of Unfolded Proteins at Amino Acid Resolution from NMR Residual Dipolar Couplings
Gabrielle Nodet et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
Quantitative Determination of the Conformational Properties of Partially Folded and Intrinsically Disordered Proteins Using NMR Dipolar Couplings
Malene Ringkjobing Jensen et al.
STRUCTURE (2009)
Intrinsically disordered proteins in human diseases: Introducing the D-2 concept
Vladimir N. Uversky et al.
ANNUAL REVIEW OF BIOPHYSICS (2008)
Calculation of residual dipolar couplings from disordered state ensembles using local alignment
Joseph A. Marsh et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)
Quantitative conformational analysis of partially folded proteins from residual dipolar couplings: Application to the molecular recognition element of Sendai virus nucleoprotein
Malene Ringkjobing Jensen et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)
NMR: prediction of molecular alignment from structure using the PALES software
Markus Zweckstetter
NATURE PROTOCOLS (2008)
Theoretical framework for NMR residual dipolar couplings in unfolded proteins
O. I. Obolensky et al.
JOURNAL OF BIOMOLECULAR NMR (2007)
Mapping the conformational landscape of urea-denatured ubiquitin using residual dipolar couplings
Sebastian Meier et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Distinguishing among structural ensembles of the GB1 peptide: REMD simulations and NMR experiments
Daniel S. Weinstock et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure
Joseph A. Marsh et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins
Barbara Richter et al.
JOURNAL OF BIOMOLECULAR NMR (2007)
Analysis of molecular recognition features (MoRFs)
Amrita Mohan et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
PROFASI:: A Monte Carlo simulation package for protein folding and aggregation
Anders Irback et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)
A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering
P Bernadó et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Inferential structure determination
W Rieping et al.
SCIENCE (2005)
Calculation of ensembles of structures representing the unfolded state of an SH3 domain
WY Choy et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Assessing the effect of conformational averaging on the measured values of observables
R Bürgi et al.
JOURNAL OF BIOMOLECULAR NMR (2001)
分享论文
