4.2 Article

State-time spectrum of signal transduction logic models

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Querying quantitative logic models (Q2LM) to study intracellular signaling networks and cell-cytokine interactions

Melody K. Morris et al.

BIOTECHNOLOGY JOURNAL (2012)

Article Mathematical & Computational Biology

Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks

Daniel C. Kirouac et al.

BMC SYSTEMS BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Setting the Standards for Signal Transduction Research

Julio Saez-Rodriguez et al.

SCIENCE SIGNALING (2011)

Article Biochemistry & Molecular Biology

A Directed Protein Interaction Network for Investigating Intracellular Signal Transduction

Arunachalam Vinayagam et al.

SCIENCE SIGNALING (2011)

Article Biochemistry & Molecular Biology

Logic-Based Models for the Analysis of Cell Signaling Networks

Melody K. Morris et al.

BIOCHEMISTRY (2010)

Article Biochemical Research Methods

Odefy - From discrete to continuous models

Jan Krumsiek et al.

BMC BIOINFORMATICS (2010)

Article Oncology

Cancer systems biology: a network modeling perspective

Pamela K. Kreeger et al.

CARCINOGENESIS (2010)

Article Computer Science, Interdisciplinary Applications

An evolutionary method for complex-process optimization

Jose A. Egea et al.

COMPUTERS & OPERATIONS RESEARCH (2010)

Review Cell Biology

Simplistic pathways or complex networks?

Claus Jorgensen et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2010)

Review Microbiology

Boolean models of within-host immune interactions

Juilee Thakar et al.

CURRENT OPINION IN MICROBIOLOGY (2010)

Review Cell Biology

Classic and contemporary approaches to modeling biochemical reactions

William W. Chen et al.

GENES & DEVELOPMENT (2010)

Editorial Material Oncology

Competitors Try Collaboration To Speed Drug Development

Margie Patlak

JOURNAL OF THE NATIONAL CANCER INSTITUTE (2010)

Article Multidisciplinary Sciences

A Boolean Approach to Linear Prediction for Signaling Network Modeling

Federica Eduati et al.

PLOS ONE (2010)

Article Biochemical Research Methods

Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement

Laurence Calzone et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Know your limits: Assumptions, constraints and interpretation in systems biology

Garth R. Ilsley et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2009)

Article Mathematical & Computational Biology

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling

Dominik M. Wittmann et al.

BMC SYSTEMS BIOLOGY (2009)

Article Mathematical & Computational Biology

Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance

Oezguer Sahin et al.

BMC SYSTEMS BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Tissue specificity and the human protein interaction network

Alice Bossi et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

Anna Bauer-Mehren et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

Julio Saez-Rodriguez et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

The Systems Biology Graphical Notation

Nicolas Le Novere et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

ON/OFF and Beyond - A Boolean Model of Apoptosis

Rebekka Schlatter et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Review Cell Biology

Protein Kinases: Starting a Molecular Systems View of Endocytosis

Pisca Liberali et al.

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY (2008)

Article Biochemical Research Methods

Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc

Aitor Gonzalez et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

Synchronous versus asynchronous modeling of gene regulatory networks

Abhishek Garg et al.

BIOINFORMATICS (2008)

Article Mathematical & Computational Biology

Optimization in computational systems biology

Julio R. Banga

BMC SYSTEMS BIOLOGY (2008)

Review Pharmacology & Pharmacy

Logic models of pathway biology

Steven Watterson et al.

DRUG DISCOVERY TODAY (2008)

Review Biochemistry & Molecular Biology

Modelling cellular signalling systems

Padmini Rangamani et al.

ESSAYS IN BIOCHEMISTRY: SYSTEMS BIOLOGY, VOL 45 (2008)

Review Biochemistry & Molecular Biology

A comprehensive modular map of molecular interactions in RB/E2F pathway

Laurence Calzone et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Article Multidisciplinary Sciences

Emergent decision-making in biological signal transduction networks

Tomas Helikar et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Biochemical Research Methods

Protein networking: insights into global functional organization of proteomes

Enrico Pieroni et al.

PROTEOMICS (2008)

Article Mathematical & Computational Biology

Boolean network simulations for life scientists

Istvan Albert et al.

SOURCE CODE FOR BIOLOGY AND MEDICINE (2008)

Article Biochemical Research Methods

Dynamic simulation of regulatory networks using SQUAD

Alessandro Di Cara et al.

BMC BIOINFORMATICS (2007)

Review Biotechnology & Applied Microbiology

Executable cell biology

Jasmin Fisher et al.

NATURE BIOTECHNOLOGY (2007)

Article Mathematical & Computational Biology

Structural and functional analysis of cellular networks with CellNetAnalyzer

Steffen Klamt et al.

BMC SYSTEMS BIOLOGY (2007)

Review Cell Biology

Physicochemical modelling of cell signalling pathways

Bree B. Aldridge et al.

NATURE CELL BIOLOGY (2006)

Article Biochemical Research Methods

Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle

Adrien Faure et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

VANTED: A system for advanced data analysis and visualization in the context of biological networks

BH Junker et al.

BMC BIOINFORMATICS (2006)

Article Biochemical Research Methods

A methodology for the structural and functional analysis of signaling and regulatory networks

S Klamt et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Pathguide: a Pathway Resource List

Gary D. Bader et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Mathematical & Computational Biology

A method for the generation of standardized qualitative dynamical systems of regulatory networks

Luis Mendoza et al.

THEORETICAL BIOLOGY AND MEDICAL MODELLING (2006)

Review Genetics & Heredity

Network biology:: Understanding the cell's functional organization

AL Barabási et al.

NATURE REVIEWS GENETICS (2004)

Article Biochemistry & Molecular Biology

Steady-state analysis of genetic regulatory networks modelled by probabilistic Boolean networks

I Shmulevich et al.

COMPARATIVE AND FUNCTIONAL GENOMICS (2003)

Article Multidisciplinary Sciences

The IκB-NF-κB signaling module:: Temporal control and selective gene activation

A Hoffmann et al.

SCIENCE (2002)

Review Biochemical Research Methods

Modeling and simulation of genetic regulatory systems: A literature review

H De Jong

JOURNAL OF COMPUTATIONAL BIOLOGY (2002)