4.6 Review

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biology

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

Daniel J. Macqueen et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)

Editorial Material Evolutionary Biology

State-of the art methodologies dictate new standards for phylogenetic analysis

Maria Anisimova et al.

BMC EVOLUTIONARY BIOLOGY (2013)

Review Plant Sciences

Sexual polyploidization in plants cytological mechanisms and molecular regulation

Nico De Storme et al.

NEW PHYTOLOGIST (2013)

Article Biochemistry & Molecular Biology

Comparative Genomics Suggests That an Ancestral Polyploidy Event Leads to Enhanced Root Nodule Symbiosis in the Papilionoideae

Qi-Gang Li et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Genetics & Heredity

Genomic and epigenetic insights into the molecular bases of heterosis

Z. Jeffrey Chen

NATURE REVIEWS GENETICS (2013)

Article Biology

Ploidy frequencies in plants with ploidy heterogeneity: fitting a general gametic model to empirical population data

Jan Suda et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Multidisciplinary Sciences

Polyploids Exhibit Higher Potassium Uptake and Salinity Tolerance in Arabidopsis

Dai-Yin Chao et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Time Scales of Critical Events Around the Cretaceous-Paleogene Boundary

Paul R. Renne et al.

SCIENCE (2013)

Article Environmental Sciences

K-Pg extinction: Reevaluation of the heat-fire hypothesis

Douglas S. Robertson et al.

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2013)

Editorial Material Biology

Nothing in Biology Makes Sense Except in the Light of Evolution

Theodosius Dobzhansky

AMERICAN BIOLOGY TEACHER (2013)

Review Plant Sciences

The more the better? The role of polyploidy in facilitating plant invasions

Mariska te Beest et al.

ANNALS OF BOTANY (2012)

Review Plant Sciences

Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model

M. Eric Schranz et al.

CURRENT OPINION IN PLANT BIOLOGY (2012)

Review Plant Sciences

Redundancy and rewiring of genetic networks following genome-wide duplication events

Riet De Smet et al.

CURRENT OPINION IN PLANT BIOLOGY (2012)

Review Plant Sciences

Rarely successful polyploids and their legacy in plant genomes

Nils Arrigo et al.

CURRENT OPINION IN PLANT BIOLOGY (2012)

Article Evolutionary Biology

Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses

James C. Schnable et al.

GENOME BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

Eli Rodgers-Melnick et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Alexei J. Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Gamma Paleohexaploidy in the Stem Lineage of Core Eudicots: Significance for MADS-Box Gene and Species Diversification

Dries Vekemans et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles

Daniel G. Mulcahy et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)

Article Multidisciplinary Sciences

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato et al.

NATURE (2012)

Article Multidisciplinary Sciences

Comparative genomics of rhizobia nodulating soybean suggests extensive recruitment of lineage-specific genes in adaptations

Chang Fu Tian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biology

Polyploid organisms

Song Can et al.

SCIENCE CHINA-LIFE SCIENCES (2012)

Article Biotechnology & Applied Microbiology

A genome triplication associated with early diversification of the core eudicots

Yuannian Jiao et al.

GENOME BIOLOGY (2012)

Article Ecology

A Unified Model of Autopolyploid Establishment and Evolution

Benjamin P. Oswald et al.

AMERICAN NATURALIST (2011)

Article Biochemistry & Molecular Biology

Efficient storage of high throughput DNA sequencing data using reference-based compression

Markus Hsi-Yang Fritz et al.

GENOME RESEARCH (2011)

Article Plant Sciences

Ploidy influences rarity and invasiveness in plants

Maharaj K. Pandit et al.

JOURNAL OF ECOLOGY (2011)

Article Plant Sciences

Polyploidization mechanisms: temperature environment can induce diploid gamete formation in Rosa sp.

Yann Pecrix et al.

JOURNAL OF EXPERIMENTAL BOTANY (2011)

Article Multidisciplinary Sciences

Ancestral polyploidy in seed plants and angiosperms

Yuannian Jiao et al.

NATURE (2011)

Article Multidisciplinary Sciences

LysM-Type Mycorrhizal Receptor Recruited for Rhizobium Symbiosis in Nonlegume Parasponia

Rik Op den Camp et al.

SCIENCE (2011)

Article Multidisciplinary Sciences

Recently Formed Polyploid Plants Diversify at Lower Rates

Itay Mayrose et al.

SCIENCE (2011)

Article Statistics & Probability

KERNEL DENSITY ESTIMATION VIA DIFFUSION

Z. I. Botev et al.

ANNALS OF STATISTICS (2010)

Article Developmental Biology

Polyploidy-Associated Genomic Instability inArabidopsis thaliana

Yixing Wang et al.

GENESIS (2010)

Article Evolutionary Biology

Nonrandom Survival of Gene Conversions among Yeast Ribosomal Proteins Duplicated through Genome Doubling

Annette M. Evangelisti et al.

GENOME BIOLOGY AND EVOLUTION (2010)

Review Plant Sciences

Evolutionary consequences of autopolyploidy

Christian Parisod et al.

NEW PHYTOLOGIST (2010)

Article Multidisciplinary Sciences

Polyploidy Did Not Predate the Evolution of Nodulation in All Legumes

Steven B. Cannon et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants

Stephen A. Smith et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Old gene duplication facilitates origin and diversification of an innovative communication system-twice

Matthew E. Arnegard et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Plant Sciences

MITOTIC INSTABILITY IN RESYNTHESIZED AND NATURAL POLYPLOIDS OF THE GENUS ARABIDOPSIS (BRASSICACEAE)

Kirsten M. Wright et al.

AMERICAN JOURNAL OF BOTANY (2009)

Review Plant Sciences

POLYPLOIDY AND ANGIOSPERM DIVERSIFICATION

Douglas E. Soltis et al.

AMERICAN JOURNAL OF BOTANY (2009)

Article Evolutionary Biology

Evolutionary Persistence of Functional Compensation by Duplicate Genes in Arabidopsis

Kousuke Hanada et al.

GENOME BIOLOGY AND EVOLUTION (2009)

Review Evolutionary Biology

Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates

Matthew W. Hahn

JOURNAL OF HEREDITY (2009)

Review Genetics & Heredity

OPINION The evolutionary significance of ancient genome duplications

Yves Van de Peer et al.

NATURE REVIEWS GENETICS (2009)

Editorial Material Multidisciplinary Sciences

Surviving the K-T mass extinction: New perspectives of polyploidization in angiosperms

Douglas E. Soltis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

Jeffrey A. Fawcett et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Plant Sciences

The flowering world: a tale of duplications

Yves Van de Peer et al.

TRENDS IN PLANT SCIENCE (2009)

Review Plant Sciences

Coordinating nodule morphogenesis with rhizobial infection in legumes

Giles E. D. Oldroyd et al.

ANNUAL REVIEW OF PLANT BIOLOGY (2008)

Article Plant Sciences

Mating consequences of polyploid evolution in flowering plants: Current trends and insights from synthetic polyploids

Brian C. Husband et al.

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2008)

Article Multidisciplinary Sciences

The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication

Aviva Presser et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

The impact of fossils and taxon sampling on ancient molecular dating analyses

Laura A. Hug et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Increased glycolytic flux as an outcome of whole-genome duplication in yeast

Gavin C. Conant et al.

MOLECULAR SYSTEMS BIOLOGY (2007)

Article Multidisciplinary Sciences

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

Devin R. Scannell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Evolutionary Biology

Evolution of pigment synthesis pathways by gene and genome duplication in fish

Ingo Braasch et al.

BMC EVOLUTIONARY BIOLOGY (2007)

Article Biochemistry & Molecular Biology

An ERF transcription factor in Medicago truncatula that is essential for nod factor signal transduction

Patrick H. Middleton et al.

PLANT CELL (2007)

Article Evolutionary Biology

Evolution of duplicate gene expression in polyploid and hybrid plants

Keith L. Adams

JOURNAL OF HEREDITY (2007)

Article Biotechnology & Applied Microbiology

All duplicates are not equal: the difference between small-scale and genome duplication

Luke Hakes et al.

GENOME BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication

Matthew J. Hegarty et al.

CURRENT BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

Michael Freeling et al.

GENOME RESEARCH (2006)

Article Biochemistry & Molecular Biology

Widespread genome duplications throughout the history of flowering plants

Liying Cui et al.

GENOME RESEARCH (2006)

Article Biochemistry & Molecular Biology

Relaxed phylogenetics and dating with confidence

Alexei J. Drummond et al.

PLOS BIOLOGY (2006)

Article Biochemistry & Molecular Biology

What is the role of genome duplication in the evolution of complexity and diversity?

KD Crow et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Genetics & Heredity

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

JL Wang et al.

GENETICS (2006)

Article Biochemistry & Molecular Biology

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Review Genetics & Heredity

The advantages and disadvantages of being polyploid

L Comai

NATURE REVIEWS GENETICS (2005)

Article Biochemistry & Molecular Biology

From 2R to 3R: evidence for a fish-specific genome duplication (FSGD)

A Meyer et al.

BIOESSAYS (2005)

Article Geosciences, Multidisciplinary

Abnormal pollen grains: an outcome of deteriorating atmospheric conditions around the Permian - Triassic boundary

CB Foster et al.

JOURNAL OF THE GEOLOGICAL SOCIETY (2005)

Article Multidisciplinary Sciences

Modeling gene and genome duplications in eukaryotes

S Maere et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Cycles in fossil diversity

RA Rohde et al.

NATURE (2005)

Review Microbiology

Diversify or die: Generation of diversity in response to stress

A Aertsen et al.

CRITICAL REVIEWS IN MICROBIOLOGY (2005)

Article Plant Sciences

Genomic changes in synthetic Arabidopsis polyploids

A Madlung et al.

PLANT JOURNAL (2005)

Article Multidisciplinary Sciences

Environmental mutagenesis during the end-Permian ecological crisis

H Visscher et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Evolutionary Biology

Polyploidy in arctic plants

C Brochmann et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2004)

Article Evolutionary Biology

'Why polyploidy is rarer in animals than in plants': myths and mechanisms

BK Mable

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2004)

Article Evolutionary Biology

The role of triploid hybrids in the evolutionary dynamics of mixed-ploidy populations

BC Husband

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2004)

Article Multidisciplinary Sciences

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

AH Paterson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Genetics & Heredity

Duplication and divergence: The evolution of new genes and old ideas

JS Taylor et al.

ANNUAL REVIEW OF GENETICS (2004)

Review Genetics & Heredity

Subfunction partitioning, the teleost radiation and the annotation of the human genome

J Postlethwait et al.

TRENDS IN GENETICS (2004)

Article Multidisciplinary Sciences

Host sanctions and the legume-rhizobium mutualism

ET Kiers et al.

NATURE (2003)

Article Multidisciplinary Sciences

Major ecological transitions in wild sunflowers facilitated by hybridization

LH Rieseberg et al.

SCIENCE (2003)

Review Genetics & Heredity

Understanding mechanisms of novel gene expression in polyploids

TC Osborn et al.

TRENDS IN GENETICS (2003)

Article Biochemistry & Molecular Biology

Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach

MJ Sanderson

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Multidisciplinary Sciences

The evolutionary fate and consequences of duplicate genes

M Lynch et al.

SCIENCE (2000)

Review Microbiology

Genetic variation: molecular mechanisms and impact on microbial evolution

W Arber

FEMS MICROBIOLOGY REVIEWS (2000)

Article Microbiology

Evolution-driving genes

M Radman et al.

RESEARCH IN MICROBIOLOGY (2000)