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E Susko et al.
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Phylogenomics: the beginning of incongruence?
O Jeffroy et al.
TRENDS IN GENETICS (2006)
Phylogenetic identification of lateral genetic transfer events
RG Beiko et al.
BMC EVOLUTIONARY BIOLOGY (2006)
Application of phylogenetic networks in evolutionary studies
DH Huson et al.
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Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates
Yoshihito Niimura et al.
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RG Beiko et al.
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Genome evolution in bacteria: order beneath chaos
JG Lawrence et al.
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The cobweb of life revealed by genome-scale estimates of horizontal gene transfer
F Ge et al.
PLOS BIOLOGY (2005)
The net of life: Reconstructing the microbial phylogenetic network
V Kunin et al.
GENOME RESEARCH (2005)
Tree pattern matching in phylogenetic trees:: automatic search for orthologs or paralogs in homologous gene sequence databases
JF Dufayard et al.
BIOINFORMATICS (2005)
Do orthologous gene phylogenies really support tree-thinking?
E Bapteste et al.
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Stochastic models for horizontal gene transfer: Taking a random walk through tree space
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Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
H Philippe et al.
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Plant self-incompatibility in natural populations: a critical assessment of recent theoretical and empirical advances
V Castric et al.
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Does a tree-like phylogeny only exist at the tips in the prokaryotes?
CJ Creevey et al.
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Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes
F Thomarat et al.
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From gene trees to organismal phylogeny in prokaryotes:: The case of the γ-proteobacteria
E Lerat et al.
PLOS BIOLOGY (2003)
Horizontal gene transfer accelerates genome innovation and evolution
R Jain et al.
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A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon et al.
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Phylogenetics and the cohesion of bacterial genomes
V Daubin et al.
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Prokaryotic evolution in light of gene transfer
JP Gogarten et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Archaeal phylogeny based on ribosomal proteins
O Matte-Tailliez et al.
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CONSEL: for assessing the confidence of phylogenetic tree selection
H Shimodaira et al.
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Evolutionary implications of the frequent horizontal transfer of mismatch repair genes
E Denamur et al.
CELL (2000)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
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