4.5 Article

Verification of cardiac tissue electrophysiology simulators using an N-version benchmark

出版社

ROYAL SOC
DOI: 10.1098/rsta.2011.0139

关键词

benchmark; electrophysiology; cardiac; modelling; verification

资金

  1. Newton Institute
  2. UK Biotechnology and Biological Sciences Research Council
  3. Wellcome Trust
  4. UK Engineering and Physical Sciences Research Council [EP/F059361/1, EP/F043929/1, EP/G007527/1, EP/D048400/1]
  5. Medical Research Council
  6. Richard A. and Nora Eccles Fund for Cardiovascular Research
  7. Nora Eccles Treadwell Foundation
  8. British Heart Foundation [PG/08/019/24600]
  9. European Commission [22449, 224381]
  10. UK Medical Research Council
  11. Plan Nacional de Investigacion Cientifica
  12. Desarrollo e Innovacion Tecnologica del Ministerio de Ciencia e Innovacion, Spain [TEC2008-0290]
  13. National Science Foundation [0824399, 0926190, 1028261]
  14. Research Council of Norway
  15. Austria Science Fund [F3210-N18]
  16. National Institute of Health [1RO1 HL 10119601]
  17. EPSRC [EP/F043929/1, EP/F059361/1, EP/D048400/1, EP/G007527/1] Funding Source: UKRI
  18. MRC [G0701776] Funding Source: UKRI
  19. Austrian Science Fund (FWF) [F 3201] Funding Source: researchfish
  20. Engineering and Physical Sciences Research Council [EP/F043929/1, EP/H019898/1, EP/D048400/1, EP/F059361/1, EP/G007527/1] Funding Source: researchfish
  21. Medical Research Council [G0701776] Funding Source: researchfish
  22. Directorate For Engineering
  23. Div Of Chem, Bioeng, Env, & Transp Sys [0824399] Funding Source: National Science Foundation
  24. Directorate For Engineering
  25. Div Of Civil, Mechanical, & Manufact Inn [1028261] Funding Source: National Science Foundation
  26. Division Of Computer and Network Systems
  27. Direct For Computer & Info Scie & Enginr [0926190] Funding Source: National Science Foundation

向作者/读者索取更多资源

Ongoing developments in cardiac modelling have resulted, in particular, in the development of advanced and increasingly complex computational frameworks for simulating cardiac tissue electrophysiology. The goal of these simulations is often to represent the detailed physiology and pathologies of the heart using codes that exploit the computational potential of high-performance computing architectures. These developments have rapidly progressed the simulation capacity of cardiac virtual physiological human style models; however, they have also made it increasingly challenging to verify that a given code provides a faithful representation of the purported governing equations and corresponding solution techniques. This study provides the first cardiac tissue electrophysiology simulation benchmark to allow these codes to be verified. The benchmark was successfully evaluated on 11 simulation platforms to generate a consensus gold-standard converged solution. The benchmark definition in combination with the gold-standard solution can now be used to verify new simulation codes and numerical methods in the future.

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