4.5 Article

CellML metadata standards, associated tools and repositories

出版社

ROYAL SOC
DOI: 10.1098/rsta.2008.0310

关键词

CellML; markup languages; metadata; modelling

资金

  1. Wellcome Trust
  2. NIH
  3. New Zealand Foundation for Research, Science and Technology
  4. Maurice Wilkins Centre
  5. VPH

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The development of standards for encoding mathematical models is an important component of model building and model sharing among scientists interested in understanding multi-scale physiological processes. CellML provides such a standard, particularly for models based on biophysical mechanisms, and a substantial number of models are now available in the CellML Model Repository. However, there is an urgent need to extend the current CellML metadata standard to provide biological and biophysical annotation of the models in order to facilitate model sharing, automated model reduction and connection to biological databases. This paper gives a broad overview of a number of new developments on CellML metadata and provides links to further methodological details available from the CellML website.

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