4.2 Review

Next-generation sequencing and large genome assemblies

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

Elizabeth P. Murchison et al.

Article Biochemistry & Molecular Biology

Efficient de novo assembly of large genomes using compressed data structures

Jared T. Simpson et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

GAGE: A critical evaluation of genome assemblies and assembly algorithms

Steven L. Salzberg et al.

GENOME RESEARCH (2012)

Article Genetics & Heredity

De novo assembly and genotyping of variants using colored de Bruijn graphs

Zamin Iqbal et al.

NATURE GENETICS (2012)

Article Biochemistry & Molecular Biology

Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination

Filip Van Nieuwerburgh et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Generation of Long Insert Pairs Using a Cre-LoxP Inverse PCR Approach

Ze Peng et al.

PLOS ONE (2012)

Article Biochemical Research Methods

HiTEC: accurate error correction in high-throughput sequencing data

Lucian Ilie et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Comparative studies of de novo assembly tools for next-generation sequencing technologies

Yong Lin et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Fast scaffolding with small independent mixed integer programs

Leena Salmela et al.

BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

Andre Gilles et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Dent Earl et al.

GENOME RESEARCH (2011)

Review Biochemistry & Molecular Biology

Field guide to next-generation DNA sequencers

Travis C. Glenn

MOLECULAR ECOLOGY RESOURCES (2011)

Article Multidisciplinary Sciences

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

Xiangchao Gan et al.

NATURE (2011)

Article Multidisciplinary Sciences

An integrated semiconductor device enabling non-optical genome sequencing

Jonathan M. Rothberg et al.

NATURE (2011)

Article Biotechnology & Applied Microbiology

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

Yingrui Li et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

Limitations of next-generation genome sequence assembly

Can Alkan et al.

NATURE METHODS (2011)

Article Multidisciplinary Sciences

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

Sante Gnerre et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)

Webb Miller et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

Gap5-editing the billion fragment sequence assembly

James K. Bonfield et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Efficient construction of an assembly string graph using the FM-index

Jared T. Simpson et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Assembly of large genomes using second-generation sequencing

Michael C. Schatz et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

The sequence and de novo assembly of the giant panda genome

Ruiqiang Li et al.

NATURE (2010)

Article Multidisciplinary Sciences

Complete Khoisan and Bantu genomes from southern Africa

Stephan C. Schuster et al.

NATURE (2010)

Article Multidisciplinary Sciences

A map of human genome variation from population-scale sequencing

David Altshuler et al.

NATURE (2010)

Editorial Material Biotechnology & Applied Microbiology

Advancing RNA-Seq analysis

Brian J. Haas et al.

NATURE BIOTECHNOLOGY (2010)

Article Pharmacology & Pharmacy

Impact of the 1000 Genomes Project on the next wave of pharmacogenomic discovery

Wei Zhang et al.

PHARMACOGENOMICS (2010)

Article Biotechnology & Applied Microbiology

Detection and correction of false segmental duplications caused by genome mis-assembly

David R. Kelley et al.

GENOME BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Quake: quality-aware detection and correction of sequencing errors

David R. Kelley et al.

GENOME BIOLOGY (2010)

Article Biochemistry & Molecular Biology

ABySS: A parallel assembler for short read sequence data

Jared T. Simpson et al.

GENOME RESEARCH (2009)

Review Biochemistry & Molecular Biology

Next-generation sequencing of vertebrate experimental organisms

Daniel J. Turner et al.

MAMMALIAN GENOME (2009)

Article Oncology

Next-generation sequencing

Jorge S. Reis-Filho

BREAST CANCER RESEARCH (2009)

Article Biochemical Research Methods

Aggressive assembly of pyrosequencing reads with mates

Jason R. Miller et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

Consensus generation and variant detection by Celera Assembler

Gennady Denisov et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

ALLPATHS: De novo assembly of whole-genome shotgun microreads

Jonathan Butler et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Multidisciplinary Sciences

The complete genome of an individual by massively parallel DNA sequencing

David A. Wheeler et al.

NATURE (2008)

Article Multidisciplinary Sciences

The diploid genome sequence of an Asian individual

Jun Wang et al.

NATURE (2008)

Article Biochemical Research Methods

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Ali Mortazavi et al.

NATURE METHODS (2008)

Article Biochemistry & Molecular Biology

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

Juliane C. Dohm et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Pharmacology & Pharmacy

Copy number variants and pharmacogenomics

K Ouahchi et al.

PHARMACOGENOMICS (2006)

Article Biochemical Research Methods

The fragment assembly string graph

EW Myers

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

The phusion assembler

JC Mullikin et al.

GENOME RESEARCH (2003)

Article Multidisciplinary Sciences

An Eulerian path approach to DNA fragment assembly

PA Pevzner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Review Multidisciplinary Sciences

Initial sequencing and analysis of the human genome

ES Lander et al.

NATURE (2001)

Review Multidisciplinary Sciences

A whole-genome assembly of Drosophila

EW Myers et al.

SCIENCE (2000)