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Leonhard Schnittger et al.
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Expression and strain variation of the novel small open reading frame (smorf) multigene family in Babesia bovis
Lucas M. Ferreri et al.
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Martin T. Swain et al.
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Edouard Vannier et al.
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Emmanuel Cornillot et al.
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Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species
Andrew P. Jackson et al.
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Marten Boetzer et al.
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Jean-Philippe Doyon et al.
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Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity
Siu-Hong Chan et al.
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Jane: a new tool for the cophylogeny reconstruction problem
Chris Conow et al.
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Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
Thomas D. Otto et al.
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Evolution and diversity of secretome genes in the apicomplexan parasite Theileria annulata
William Weir et al.
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Molecular mechanisms underlying the control of antigenic variation in African trypanosomes
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Yu-Ping Xiao et al.
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Moving in and renovating: exporting proteins from Plasmodium into host erythrocytes
Daniel E. Goldberg et al.
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Stefan Magez et al.
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Stephane Guindon et al.
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Thomas S. Rask et al.
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Isheng J. Tsai et al.
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Kevin J. Verstrepen et al.
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Liam J. Morrison et al.
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Malaria parasite proteins that remodel the host erythrocyte
Alexander G. Maier et al.
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Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens
Kirk W. Deitsch et al.
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S. L. Takala et al.
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Jacqueline Schmuckli-Maurer et al.
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Artur Scherf et al.
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Tim Carver et al.
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
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Matthias Frank et al.
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Peter C. Bull et al.
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Christiaan van Ooij et al.
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Clustal W and clustal X version 2.0
M. A. Larkin et al.
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Kelly A. Brayton et al.
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F. Carrat et al.
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Lucio Marcello et al.
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Maciej F. Boni et al.
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Feng Chen et al.
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Patterns of gene recombination shape var gene repertoires in Plasmodium falciparum:: comparisons of geographically diverse isolates
Susan M. Kraemer et al.
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Gene conversion is a convergent strategy for pathogen antigenic variation
Guy H. Palmer et al.
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Antigenic variation in Pneumocystis
James R. Stringer
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Antigenic variation in plasmodium falciparum: Gene organization and regulation of the var multigene family
Sue A. Kyes et al.
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Adama R. Trimnell et al.
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AUGUSTUS:: ab initio prediction of alternative transcripts
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TC Bruen et al.
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B Al-Khedery et al.
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Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites
TJ Sargeant et al.
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Regulation of antigen gene expression in Trypanosoma brucei
E Pays
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JIGSAW: integration of multiple sources of evidence for gene prediction
JE Allen et al.
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Gene arrays at Pneumocystis carinii telomeres
SP Keely et al.
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The genome of the African trypanosome Trypanosoma brucei
M Berriman et al.
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M Marti et al.
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TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
WH Majoros et al.
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Anaplasma marginale (Rickettsiales : Anaplasmataceae): recent advances in defining host-pathogen adaptations of a tick-borne rickettsia
KM Kocan et al.
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A Zintl et al.
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OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
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MrBayes 3: Bayesian phylogenetic inference under mixed models
F Ronquist et al.
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JD Barry et al.
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MRBAYES: Bayesian inference of phylogenetic trees
JP Huelsenbeck et al.
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AM Kjemtrup et al.
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Selection of Babesia bovis-infected erythrocytes for adhesion to endothelial cells coselects for altered variant erythrocyte surface antigen isoforms
RM O'Connor et al.
JOURNAL OF IMMUNOLOGY (2000)
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DR Allred et al.
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