相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。A sequence-dependent rigid-base model of DNA
O. Gonzalez et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Funneling and frustration in the energy landscapes of some designed and simplified proteins
Ha H. Truong et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization
Daniel M. Hinckley et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Perspective: Coarse-grained models for biomolecular systems
W. G. Noid
JOURNAL OF CHEMICAL PHYSICS (2013)
Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer
Tomas Drsata et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Local Frustration Determines Molecular and Macroscopic Helix Structures
Christopher J. Forman et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2013)
Coarse-graining DNA for simulations of DNA nanotechnology
Jonathan P. K. Doye et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2013)
NAFlex: a web server for the study of nucleic acid flexibility
Adam Hospital et al.
NUCLEIC ACIDS RESEARCH (2013)
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale
Tianyin Zhou et al.
NUCLEIC ACIDS RESEARCH (2013)
Frustration in protein-DNA binding influences conformational switching and target search kinetics
Amir Marcovitz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
What does physics have to do with cancer?
Franziska Michor et al.
NATURE REVIEWS CANCER (2011)
Self-assembly of three-dimensional prestressed tensegrity structures from DNA
Tim Liedl et al.
NATURE NANOTECHNOLOGY (2010)
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA
Richard Lavery et al.
NUCLEIC ACIDS RESEARCH (2010)
A measure of bending in nucleic acids structures applied to A-tract DNA
F. Lankas et al.
NUCLEIC ACIDS RESEARCH (2010)
Signatures of Protein-DNA Recognition in Free DNA Binding Sites
Jason W. Locasale et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Conformational analysis of nucleic acids revisited: Curves
R. Lavery et al.
NUCLEIC ACIDS RESEARCH (2009)
Fly-casting in protein-DNA binding: Frustration between protein folding and electrostatics facilitates target recognition
Yaakov Levy et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
A genomic code for nucleosome positioning
Eran Segal et al.
NATURE (2006)
Sequence-dependent conformational energy of DNA derived from molecular dynamics simulations:: Toward understanding the indirect readout mechanism in protein-DNA recognition
MJ Araúzo-Bravo et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
DNA A-tract bending in three dimensions:: Solving the dA4T4 vs. dT4A4 conundrum
R Stefl et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
XJ Lu et al.
NUCLEIC ACIDS RESEARCH (2003)
Overall structure and sugar dynamics of a DNA dodecamer from homoand heteronuclear dipolar couplings and 31P chemical shift anisotropy
ZG Wu et al.
JOURNAL OF BIOMOLECULAR NMR (2003)
DNA basepair step deformability inferred from molecular dynamics simulations
F Lankas et al.
BIOPHYSICAL JOURNAL (2003)
The Protein Data Bank
HM Berman et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2002)
Cations mediate B-DNA conformational heterogeneity
CC Sines et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2000)
Sequence-dependent DNA structure: Tetranucleotide conformational maps
MJ Packer et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)