相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data
Sangsoon Woo et al.
BIOINFORMATICS (2013)
NORMAL: accurate nucleosome positioning using a modified Gaussian mixture model
Anton Polishko et al.
BIOINFORMATICS (2012)
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
Anshul Kundaje et al.
GENOME RESEARCH (2012)
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Jie Wang et al.
GENOME RESEARCH (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
TGFβ signalling in context
Joan Massague
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)
Combinations of Histone Modifications Mark Exon Inclusion Levels
Stefan Enroth et al.
PLOS ONE (2012)
Cell Type-specific Target Selection by Combinatorial Binding of Smad2/3 Proteins and Hepatocyte Nuclear Factor 4α in HepG2 Cells
Anna Mizutani et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Nucleosome dynamics define transcriptional enhancers
Housheng Hansen He et al.
NATURE GENETICS (2010)
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Elodie Portales-Casamar et al.
NUCLEIC ACIDS RESEARCH (2010)
ENCODE whole-genome data in the UCSC Genome Browser
Kate R. Rosenbloom et al.
NUCLEIC ACIDS RESEARCH (2010)
SICTIN: Rapid footprinting of massively parallel sequencing data
Stefan Enroth et al.
BioData Mining (2010)
Histones: Annotating Chromatin
Eric I. Campos et al.
ANNUAL REVIEW OF GENETICS (2009)
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
Chongzhi Zang et al.
BIOINFORMATICS (2009)
Poly(dA:dT) tracts: major determinants of nucleosome organization
Eran Segal et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
The regulation of TGFβ signal transduction
Aristidis Moustakas et al.
DEVELOPMENT (2009)
Nucleosomes are well positioned in exons and carry characteristic histone modifications
Robin Andersson et al.
GENOME RESEARCH (2009)
Histone modifications at human enhancers reflect global cell-type-specific gene expression
Nathaniel D. Heintzman et al.
NATURE (2009)
The logic of chromatin architecture and remodelling at promoters
Bradley R. Cairns
NATURE (2009)
From DNA sequence to transcriptional behaviour: a quantitative approach
Eran Segal et al.
NATURE REVIEWS GENETICS (2009)
Nucleosome positioning and gene regulation: advances through genomics
Cizhong Jiang et al.
NATURE REVIEWS GENETICS (2009)
Ensembl 2009
T. J. P. Hubbard et al.
NUCLEIC ACIDS RESEARCH (2009)
Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing
Ola Wallerman et al.
NUCLEIC ACIDS RESEARCH (2009)
BRCA1 Interacts with Smad3 and Regulates Smad3-Mediated TGF-β Signaling during Oxidative Stress Responses
Huchun Li et al.
PLOS ONE (2009)
Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
Mehdi Motallebipour et al.
GENOME BIOLOGY (2009)
Dynamic regulation of nucleosome positioning in the human genome
Dustin E. Schones et al.
CELL (2008)
Design and analysis of ChIP-seq experiments for DNA-binding proteins
Peter V. Kharchenko et al.
NATURE BIOTECHNOLOGY (2008)
Combinatorial patterns of histone acetylations and methylations in the human genome
Zhibin Wang et al.
NATURE GENETICS (2008)
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
Raja Jothi et al.
NUCLEIC ACIDS RESEARCH (2008)
The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression
Jiansheng Zhou et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Tarjei S. Mikkelsen et al.
NATURE (2007)
A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
Daniel Blankenberg et al.
GENOME RESEARCH (2007)
High-resolution profiling of histone methylations in the human genome
Artern Barski et al.
CELL (2007)
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
Istvan Albert et al.
NATURE (2007)
Differential involvement of PU.1 and Id2 downstream of TGF-β1 during Langerhans-cell commitment
LX Heinz et al.
BLOOD (2006)
Histone H4-K16 acetylation controls chromatin structure and protein interactions
M Shogren-Knaak et al.
SCIENCE (2006)
Balance of MafB and PU.1 specifies alternative macrophage or dendritic cell fate
Y Bakri et al.
BLOOD (2005)
Detection of functional DNA motifs via statistical over-representation
MC Frith et al.
NUCLEIC ACIDS RESEARCH (2004)
Evidence for nucleosome depletion at active regulatory regions genome-wide
CK Lee et al.
NATURE GENETICS (2004)
Global nucleosome occupancy in yeast
BE Bernstein et al.
GENOME BIOLOGY (2004)
The structure of DNA in the nucleosome core
TJ Richmond et al.
NATURE (2003)
Transcriptional regulation of the transforming growth factor-β-inducible mouse germ line Ig α constant region gene by functional cooperation of Smad, CREB, and AML family members
Y Zhang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)