4.8 Article

Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives

Cornelia G. Spruijt et al.

Article Biochemistry & Molecular Biology

The UCSC Genome Browser database: extensions and updates 2013

Laurence R. Meyer et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biotechnology & Applied Microbiology

Epigenetic features are significantly associated with alternative splicing

Yuanpeng Zhou et al.

BMC GENOMICS (2012)

Article Biotechnology & Applied Microbiology

Genome-wide association between DNA methylation and alternative splicing in an invertebrate

Kevin Flores et al.

BMC GENOMICS (2012)

Article Biochemistry & Molecular Biology

DNA hypermethylation of alternatively spliced and repeat sequences in humans

Andigoni Malousi et al.

MOLECULAR GENETICS AND GENOMICS (2012)

Article Biochemistry & Molecular Biology

Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus

Michael Cowley et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Cell-Specific DNA Methylation Patterns of Retina-Specific Genes

Shannath L. Merbs et al.

PLOS ONE (2012)

Article Mathematical & Computational Biology

Accurate genome-scale percentage DNA methylation estimates from microarray data

Martin J. Aryee et al.

BIOSTATISTICS (2011)

Article Biochemistry & Molecular Biology

Human Epigenome Data Reveal Increased CpG Methylation in Alternatively Spliced Sites and Putative Exonic Splicing Enhancers

Christina Anastasiadou et al.

DNA AND CELL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Cell type-specific DNA methylation at intragenic CpG islands in the immune system

Aimee M. Deaton et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors

Andrew Feber et al.

GENOME RESEARCH (2011)

Article Multidisciplinary Sciences

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

Sanjeev Shukla et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Dynamic usage of alternative splicing exons during mouse retina development

Jun Wan et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Genetics & Heredity

Genetic Control of Individual Differences in Gene-Specific Methylation in Human Brain

Dandan Zhang et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2010)

Article Multidisciplinary Sciences

Relationship between nucleosome positioning and DNA methylation

Ramakrishna K. Chodavarapu et al.

NATURE (2010)

Article Multidisciplinary Sciences

Conserved role of intragenic DNA methylation in regulating alternative promoters

Alika K. Maunakea et al.

NATURE (2010)

Article Biochemistry & Molecular Biology

A new bioinformatics analysis tools framework at EMBL-EBI

Mickael Goujon et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Conservation and divergence of methylation patterning in plants and animals

Suhua Feng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

Assaf Zemach et al.

SCIENCE (2010)

Article Genetics & Heredity

Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome

Robert S. Illingworth et al.

PLOS GENETICS (2010)

Article Biochemistry & Molecular Biology

Nucleosomes are well positioned in exons and carry characteristic histone modifications

Robin Andersson et al.

GENOME RESEARCH (2009)

Article Genetics & Heredity

Differential chromatin marking of introns and expressed exons by H3K36me3

Paulina Kolasinska-Zwierz et al.

NATURE GENETICS (2009)

Article Biochemistry & Molecular Biology

Chromatin organization marks exon-intron structure

Schraga Schwartz et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Co-transcriptional splicing of constitutive and alternative exons

Amy Pandya-Jones et al.

Article Biotechnology & Applied Microbiology

Nucleosome deposition and DNA methylation at coding region boundaries

Jung Kyoon Choi et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Comprehensive high-throughput arrays for relative methylation (CHARM)

Rafael A. Irizarry et al.

GENOME RESEARCH (2008)

Article Biochemical Research Methods

Clustal W and clustal X version 2.0

M. A. Larkin et al.

BIOINFORMATICS (2007)

Article Biotechnology & Applied Microbiology

Quantifying similarity between motifs

Shobhit Gupta et al.

GENOME BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Discovery of tissue-specific exons using comprehensive human exon microarrays

Tyson A. Clark et al.

GENOME BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

Michael F. Berger et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemistry & Molecular Biology

TRANSFAC (R): transcriptional regulation, from patterns to profiles

V Matys et al.

NUCLEIC ACIDS RESEARCH (2003)