4.8 Article

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Characterization of disordered proteins with ENSEMBLE

Mickael Krzeminski et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Describing intrinsically disordered proteins at atomic resolution by NMR

Malene Ringkjobing Jensen et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2013)

Review Chemistry, Multidisciplinary

JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia

Robert M. Hanson et al.

ISRAEL JOURNAL OF CHEMISTRY (2013)

Article Biochemistry & Molecular Biology

Update on activities at the Universal Protein Resource (UniProt) in 2013

Rolf Apweiler et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Ensembl 2013

Paul Flicek et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

(DP2)-P-2: database of disordered protein predictions

Matt E. Oates et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Chemistry, Multidisciplinary

Mapping the Potential Energy Landscape of Intrinsically Disordered Proteins at Amino Acid Resolution

Valery Ozenne et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Review Biochemistry & Molecular Biology

Structural analysis of intrinsically disordered proteins by small-angle X-ray scattering

Pau Bernado et al.

MOLECULAR BIOSYSTEMS (2012)

Review Biochemistry & Molecular Biology

Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy

Robert Schneider et al.

MOLECULAR BIOSYSTEMS (2012)

Article Biochemical Research Methods

A toolkit and benchmark study for FRET-restrained high-precision structural modeling

Stanislav Kalinin et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature

Satoshi Fukuchi et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Ensemble modeling of protein disordered states: Experimental restraint contributions and validation

Joseph A. Marsh et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Constructing ensembles for intrinsically disordered proteins

Charles K. Fisher et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Unstructural biology coming of age

Peter Tompa

CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

SAXS Ensemble Refinement of ESCRT-III CHMP3 Conformational Transitions

Bartosz Rozycki et al.

STRUCTURE (2011)

Review Biochemistry & Molecular Biology

Intrinsically disordered proteins are potential drug targets

Steven J. Metallo

CURRENT OPINION IN CHEMICAL BIOLOGY (2010)

Article Chemistry, Multidisciplinary

Jmol - a paradigm shift in crystallographic visualization

Robert M. Hanson

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2010)

Article Chemistry, Multidisciplinary

Ensemble Calculations of Unstructured Proteins Constrained by RDC and PRE Data: A Case Study of Urea-Denatured Ubiquitin

Jie-rong Huang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Chemistry, Multidisciplinary

NMR Characterization of Long-Range Order in Intrinsically Disordered Proteins

Loic Salmon et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Biochemistry & Molecular Biology

Biophysical characterization of intrinsically disordered proteins

David Eliezer

CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Structural Reorganization of α-Synuclein at Low pH Observed by NMR and REMD Simulations

Kuen-Phon Wu et al.

JOURNAL OF MOLECULAR BIOLOGY (2009)

Article Chemistry, Multidisciplinary

Determination of the Free Energy Landscape of α-Synuclein Using Spin Label Nuclear Magnetic Resonance Measurements

Jane R. Allison et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)

Review Biophysics

Intrinsically disordered proteins in human diseases: Introducing the D-2 concept

Vladimir N. Uversky et al.

ANNUAL REVIEW OF BIOPHYSICS (2008)

Article Biochemistry & Molecular Biology

Function and structure of inherently disordered proteins

A. Keith Dunker et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Role of intrinsic flexibility in signal transduction mediated by the cell cycle regulator, p27Kip1

Charles A. Galea et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Chemistry, Multidisciplinary

Calculation of residual dipolar couplings from disordered state ensembles using local alignment

Joseph A. Marsh et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Review Biochemistry & Molecular Biology

Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions

Peter Tompa et al.

TRENDS IN BIOCHEMICAL SCIENCES (2008)

Article Biochemistry & Molecular Biology

BioMagResBank

Eldon L. Ulrich et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Chemistry, Multidisciplinary

The Protein Data Bank: a historical perspective

Helen M. Berman

ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES (2008)

Article Biochemistry & Molecular Biology

Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology

Yang Shen et al.

JOURNAL OF BIOMOLECULAR NMR (2007)

Article Chemistry, Multidisciplinary

Structural characterization of flexible proteins using small-angle X-ray scattering

Pau Bernado et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Biochemistry & Molecular Biology

DisProt: the database of disordered proteins

Megan Sickmeier et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Dynamically driven protein allostery

Nataliya Popovych et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Review Cell Biology

Intrinsically unstructured proteins and their functions

HJ Dyson et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)

Article Chemistry, Multidisciplinary

Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins

E Eyal et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

A graph-theory algorithm for rapid protein side-chain prediction

AA Canutescu et al.

PROTEIN SCIENCE (2003)

Article Biochemistry & Molecular Biology

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

S Neal et al.

JOURNAL OF BIOMOLECULAR NMR (2003)

Review Biochemistry & Molecular Biology

Intrinsically unstructured proteins

P Tompa

TRENDS IN BIOCHEMICAL SCIENCES (2002)

Article Biochemical Research Methods

Intrinsically disordered protein

AK Dunker et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2001)