期刊
NUCLEIC ACIDS RESEARCH
卷 41, 期 W1, 页码 W123-W128出版社
OXFORD UNIV PRESS
DOI: 10.1093/nar/gkt418
关键词
-
资金
- Deutsche Forschungsgemeinschaft (DFG) [HO4545/1-1, STA1009/6-1]
- Institute for Mathematics and Computer Science, Ernst Moritz Arndt University of Greifswald
The prediction of protein coding genes is an important step in the annotation of newly sequenced and assembled genomes. AUGUSTUS is one of the most accurate tools for eukaryotic gene prediction. Here, we present WebAUGUSTUS, a web interface for training AUGUSTUS and predicting genes with AUGUSTUS. Depending on the needs of the user, WebAUGUSTUS generates training gene structures automatically. Besides a genome file, either a file with expressed sequence tags or a file with protein sequences is required for this step. Alternatively, it is possible to submit an externally generated training gene structure file and a genome file. The web service optimizes AUGUSTUS parameters and predicts genes with those parameters. WebAUGUSTUS is available at http://bioinf.unigreifswald.de/webaugustus.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据