相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Probing DNA shape and methylation state on a genomic scale with DNase I
Allan Lazarovici et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Mechanism of Origin DNA Recognition and Assembly of an Initiator-Helicase Complex by SV40 Large Tumor Antigen
Y. Paul Chang et al.
CELL REPORTS (2013)
Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape
Raluca Gordan et al.
CELL REPORTS (2013)
Optical Properties of Triplex DNA from Time-Dependent Density Functional Theory
Tahereh Ghane et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA
Eric P. Bishop et al.
ACS CHEMICAL BIOLOGY (2011)
Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins
Matthew Slattery et al.
CELL (2011)
Origins of Specificity in Protein-DNA Recognition
Remo Rohs et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)
The shape of the DNA minor groove directs binding by the DNA-bending protein Fis
Stefano Stella et al.
GENES & DEVELOPMENT (2010)
Electrostatic Interactions between Arginines and the Minor Groove in the Nucleosome
Sean M. West et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)
Molecular Dynamics of DNA: Comparison of Force Fields and Terminal Nucleotide Definitions
Clarisse G. Ricci et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA
Richard Lavery et al.
NUCLEIC ACIDS RESEARCH (2010)
Nuance in the double-helix and its role in protein-DNA recognition
Remo Rohs et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
The role of DNA shape in protein-DNA recognition
Remo Rohs et al.
NATURE (2009)
Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome
Stephen C. J. Parker et al.
SCIENCE (2009)
Nucleosome organization in the Drosophila genome
Travis N. Mavrich et al.
NATURE (2008)
Towards a molecular dynamics consensus view of B-DNA flexibility
Alberto Perez et al.
NUCLEIC ACIDS RESEARCH (2008)
Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
Yair Field et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Functional specificity of a Hox protein mediated by the recognition of minor groove structure
Rohit Joshi et al.
CELL (2007)
Sequence-dependent DNA deformability studied using molecular dynamics simulations
Satoshi Fujii et al.
NUCLEIC ACIDS RESEARCH (2007)
Refinenement of the AMBER force field for nucleic acids:: Improving the description of α/γ conformers
Alberto Perez et al.
BIOPHYSICAL JOURNAL (2007)
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures:: Chain breakage/closure algorithm and associated Jacobians
H Sklenar et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)
Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites
R Rohs et al.
STRUCTURE (2005)
Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations
R Rohs et al.
NUCLEIC ACIDS RESEARCH (2005)
Overall structure and sugar dynamics of a DNA dodecamer from homoand heteronuclear dipolar couplings and 31P chemical shift anisotropy
ZG Wu et al.
JOURNAL OF BIOMOLECULAR NMR (2003)
分享论文
