相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity
Hasup Lee et al.
BIOINFORMATICS (2013)
3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization
Debswapna Bhattacharya et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2013)
GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions
Junsu Ko et al.
BMC BIOINFORMATICS (2012)
GalaxyDock: Protein-Ligand Docking with Flexible Protein Side-chains
Woong-Hee Shin et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2012)
KoBaMIN: a knowledge-based minimization web server for protein structure refinement
Joao P. G. L. M. Rodrigues et al.
NUCLEIC ACIDS RESEARCH (2012)
GalaxyWEB server for protein structure prediction and refinement
Junsu Ko et al.
NUCLEIC ACIDS RESEARCH (2012)
The FALC-Loop web server for protein loop modeling
Junsu Ko et al.
NUCLEIC ACIDS RESEARCH (2011)
Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement
Dong Xu et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
CASP9 results compared to those of previous CASP experiments
Andriy Kryshtafovych et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
CASP9 assessment of free modeling target predictions
Lisa Kinch et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
Assessment of protein structure refinement in CASP9
Justin L. MacCallum et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling
Jian Zhang et al.
STRUCTURE (2011)
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
I-TASSER: a unified platform for automated protein structure and function prediction
Ambrish Roy et al.
NATURE PROTOCOLS (2010)
Protein loop modeling by using fragment assembly and analytical loop closure
Julian Lee et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Assessment of the protein-structure refinement category in CASP8
Justin L. MacCallum et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
The other 90% of the protein: Assessment beyond the C alpha s for CASP8 template-based and high-accuracy models
Daniel A. Keedy et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Structure prediction for CASP8 with all-atom refinement using Rosetta
Srivatsan Raman et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Assessment of CASP8 structure predictions for template free targets
Moshe Ben-David et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
FACTS:: Fast analytical continuum treatment of solvation
Urs Haberthuer et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2008)
Specific interactions for ab initio folding of protein terminal regions with secondary structures
Yuedong Yang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
A kinematic view of loop closure
EA Coutsias et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Scoring function for automated assessment of protein structure template quality
Y Zhang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
A graph-theory algorithm for rapid protein side-chain prediction
AA Canutescu et al.
PROTEIN SCIENCE (2003)
LGA: a method for finding 3D similarities in protein structures
A Zemla
NUCLEIC ACIDS RESEARCH (2003)
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes
T Kortemme et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Rotamer libraries in the 21st century
RL Dunbrack
CURRENT OPINION IN STRUCTURAL BIOLOGY (2002)