4.8 Article

Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Chemistry, Multidisciplinary

Frontiers in Molecular Dynamics Simulations of DNA

Alberto Perez et al.

ACCOUNTS OF CHEMICAL RESEARCH (2012)

Article Chemistry, Physical

Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium

Katarina Hart et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)

Article Chemistry, Physical

Molecular Mechanism of preQ1 Riboswitch Action: A Molecular Dynamics Study

Pavel Banas et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2012)

Review Cell Biology

Axis of ageing: telomeres, p53 and mitochondria

Erguen Sahin et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)

Article Biochemical Research Methods

Isothermal folding of G-quadruplexes

Robert D. Gray et al.

METHODS (2012)

Review Biochemical Research Methods

NMR spectroscopy of G-quadruplexes

Michael Adrian et al.

METHODS (2012)

Article Biochemistry & Molecular Biology

Comprehensive survey and geometric classification of base triples in RNA structures

Amal S. Abu Almakarem et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Surface area accessibility and the preferred topology of telomeric DNA quadruplex-ligand complexes

Shozeb M. Haider et al.

BIOCHIMIE (2011)

Review Biochemistry & Molecular Biology

A structural analysis of G-quadruplex/ligand interactions

Shozeb M. Haider et al.

BIOCHIMIE (2011)

Article Chemistry, Multidisciplinary

Structural Basis of Telomeric RNA Quadruplex-Acridine Ligand Recognition

Gavin W. Collie et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Chemistry, Multidisciplinary

Insight into G-DNA Structural Polymorphism and Folding from Sequence and Loop Connectivity through Free Energy Analysis

Xiaohui Cang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Chemistry, Multidisciplinary

Structure of Human Telomeric DNA in Crowded Solution

Brahim Heddi et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Biochemistry & Molecular Biology

Cation binding to 15-TBA quadruplex DNA is a multiple-pathway cation-dependent process

Roman V. Reshetnikov et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Chemistry, Physical

Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins

Pavel Banas et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)

Article Chemistry, Physical

Adenine ribbon stabilized by Watson-Crick and Hoogsteen hydrogen Bonds: WFT and DFT study

Wiktor Zierkiewicz et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2010)

Review Biochemistry & Molecular Biology

The structures of quadruplex nucleic acids and their drug complexes

Stephen Neidle

CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)

Review Chemistry, Physical

Single Stranded Loops of Quadruplex DNA As Key Benchmark for Testing Nucleic Acids Force Fields

Eva Fadrna et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2009)

Article Biochemistry & Molecular Biology

Classification and energetics of the base-phosphate interactions in RNA

Craig L. Zirbel et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Quadruplex DNA crystal structures and drug design

Stephen Neidle et al.

BIOCHIMIE (2008)

Article Chemistry, Physical

Energetics of the human Tel-22 quadruplex-telomestatin interaction: A molecular dynamics study

Saurabh Agrawal et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Chemistry, Physical

Stability and cations coordination of DNA and RNA 14-mer G-quadruplexes: A multiscale computational approach

Bruno Pagano et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Review Biochemistry & Molecular Biology

Stability and kinetics of G-quadruplex structures

Andrew N. Lane et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Biochemical Research Methods

Molecular dynamics simulations and their application to four-stranded DNA

Jiri Sponer et al.

METHODS (2007)

Article Chemistry, Multidisciplinary

Dynamics of B-DNA on the microsecond time scale

Alberto Perez et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Multidisciplinary

Human telomeric DNA forms parallel-stranded intramolecular G-quadruplex in K+ solution under molecular crowding condition

Yong Xue et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Biochemistry & Molecular Biology

Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures

Pascale Hazel et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Chemistry, Multidisciplinary

The Amber biomolecular simulation programs

DA Case et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

Sequence preference for BI/II conformations in DNA: MD and crystal structure data analysis

A Madhumalar et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2005)

Article Multidisciplinary Sciences

An interlocked dimeric parallel-stranded DNA quadruplex:: A potent inhibitor of HIV-1 integrase

AT Phan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Biochemistry & Molecular Biology

The structure of telomeric DNA

S Neidle et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2003)

Review Biochemistry & Molecular Biology

Assessment of telomere length and factors that contribute to its stability

SN Saldanha et al.

EUROPEAN JOURNAL OF BIOCHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Crystal structure of the potassium form of an Oxytricha nova G-quadruplex

S Haider et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

Crystal structure of parallel quadruplexes from human telomeric DNA

GN Parkinson et al.

NATURE (2002)

Article Biochemistry & Molecular Biology

A dimeric DNA interface stabilized by stacked A•(G•G•G•G)•A hexads and coordinated monovalent cations

A Kettani et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)