相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
Andrew E. Teschendorff et al.
BIOINFORMATICS (2013)
Multilocus loss of DNA methylation in individuals with mutations in the histone H3 Lysine 4 Demethylase KDM5C
Daria Grafodatskaya et al.
BMC MEDICAL GENOMICS (2013)
MENT: Methylation and expression database of normal and tumor tissues
Su-Jin Baek et al.
GENE (2013)
Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking
Natalie S. Shenker et al.
HUMAN MOLECULAR GENETICS (2013)
Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates
Gregory Hannum et al.
MOLECULAR CELL (2013)
Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis
Yun Liu et al.
NATURE BIOTECHNOLOGY (2013)
DNA methylation based biomarkers: Practical considerations and applications
Alexandre How Kit et al.
BIOCHIMIE (2012)
IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data
Dan Wang et al.
BIOINFORMATICS (2012)
Penalized logistic regression for high-dimensional DNA methylation data with case-control studies
Hokeun Sun et al.
BIOINFORMATICS (2012)
CpGassoc: an R function for analysis of DNA methylation microarray data
Richard T. Barfield et al.
BIOINFORMATICS (2012)
Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects
Kristel R. van Eijk et al.
BMC GENOMICS (2012)
Measuring the methylome in clinical samples Improved processing of the Infinium Human Methylation450 BeadChip Array
Hong Pan et al.
EPIGENETICS (2012)
MethLAB A graphical user interface package for the analysis of array-based DNA methylation data
Varun Kilaru et al.
EPIGENETICS (2012)
Genome-wide methylation screen in low-grade breast cancer identifies novel epigenetically altered genes as potential biomarkers for tumor diagnosis
Marta Faryna et al.
FASEB JOURNAL (2012)
A heterozygous IDH1R132H/WT mutation induces genome-wide alterations in DNA methylation
Christopher G. Duncan et al.
GENOME RESEARCH (2012)
Comprehensive molecular characterization of human colon and rectal cancer
Donna M. Muzny et al.
NATURE (2012)
Comprehensive molecular portraits of human breast tumours
Daniel C. Koboldt et al.
NATURE (2012)
Comprehensive genomic characterization of squamous cell lung cancers
Peter S. Hammerman et al.
NATURE (2012)
A unique regulatory phase of DNA methylation in the early mammalian embryo
Zachary D. Smith et al.
NATURE (2012)
Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues
Gilad Landan et al.
NATURE GENETICS (2012)
Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
Marta Kulis et al.
NATURE GENETICS (2012)
Analysing and interpreting DNA methylation data
Christoph Bock
NATURE REVIEWS GENETICS (2012)
Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale
Victor Barrera et al.
NUCLEIC ACIDS RESEARCH (2012)
A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network
Seung-Tae Lee et al.
NUCLEIC ACIDS RESEARCH (2012)
Differential DNA Methylation in Purified Human Blood Cells: Implications for Cell Lineage and Studies on Disease Susceptibility
Lovisa E. Reinius et al.
PLOS ONE (2012)
Identification of New Differentially Methylated Genes That Have Potential Functional Consequences in Prostate Cancer
Jin W. Kim et al.
PLOS ONE (2012)
A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip® for Methylome Profiling
Christine Clark et al.
PLOS ONE (2012)
Epigenetic stability, adaptability, and reversibility in human embryonic stem cells
Joshua D. Tompkins et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Complete pipeline for Infinium® Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation
Nizar Touleimat et al.
EPIGENOMICS (2012)
Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia
Altuna Akalin et al.
PLOS GENETICS (2012)
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
Kasper D. Hansen et al.
GENOME BIOLOGY (2012)
SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
Jovana Maksimovic et al.
GENOME BIOLOGY (2012)
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
Altuna Akalin et al.
GENOME BIOLOGY (2012)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies
Andrew E. Teschendorff et al.
BIOINFORMATICS (2011)
DNA methylation profiling reveals a predominant immune component in breast cancers
Sarah Dedeurwaerder et al.
EMBO MOLECULAR MEDICINE (2011)
Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome
Juan Sandoval et al.
EPIGENETICS (2011)
High density DNA methylation array with single CpG site resolution
Marina Bibikova et al.
GENOMICS (2011)
Integrated genomic analyses of ovarian carcinoma
D. Bell et al.
NATURE (2011)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing
Eun-Joon Lee et al.
NUCLEIC ACIDS RESEARCH (2011)
Down-Regulation of ECRG4, a Candidate Tumor Suppressor Gene, in Human Breast Cancer
Renaud Sabatier et al.
PLOS ONE (2011)
Protective Effects of White Button Mushroom (Agaricus bisporus) against Hepatic Steatosis in Ovariectomized Mice as a Model of Postmenopausal Women
Noriko Kanaya et al.
PLOS ONE (2011)
Transcriptionally repressed genes become aberrantly methylated and distinguish tumors of different lineages in breast cancer
Duncan Sproul et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Evaluation of the Infinium Methylation 450K technology
Sarah Dedeurwaerder et al.
EPIGENOMICS (2011)
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
Jordana T. Bell et al.
GENOME BIOLOGY (2011)
Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma
Houtan Noushmehr et al.
CANCER CELL (2010)
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
R. Alan Harris et al.
NATURE BIOTECHNOLOGY (2010)
Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
Hongcang Gu et al.
NATURE METHODS (2010)
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
Jeremy Goecks et al.
GENOME BIOLOGY (2010)
Mapping the cellular and molecular heterogeneity of normal and malignant breast tissues and cultured cell lines
Patricia J. Keller et al.
BREAST CANCER RESEARCH (2010)
lumi:: a pipeline for processing Illumina microarray
Pan Du et al.
BIOINFORMATICS (2008)
Comprehensive high-throughput arrays for relative methylation (CHARM)
Rafael A. Irizarry et al.
GENOME RESEARCH (2008)
Genomic changes and gene expression profiles reveal that established glioma cell lines are poorly representative of primary human gliomas
Aiguo Li et al.
MOLECULAR CANCER RESEARCH (2008)
A general framework for multiple testing dependence
Jeffrey T. Leek et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells
Tibor Rauch et al.
CANCER RESEARCH (2006)
Galaxy: A platform for interactive large-scale genome analysis
B Giardine et al.
GENOME RESEARCH (2005)
The expression and function of estrogen receptor α and β in human breast cancer and its clinical application
SI Hayashi et al.
ENDOCRINE-RELATED CANCER (2003)
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
RA Irizarry et al.
BIOSTATISTICS (2003)
The human genome browser at UCSC
WJ Kent et al.
GENOME RESEARCH (2002)
分享论文
