4.8 Article

Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Covariation between homeodomain transcription factors and the shape of their DNA binding sites

Iris Dror et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

Lin Yang et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Protein-induced changes in DNA structure and dynamics observed with noncovalent site-directed spin labeling and PELDOR

Gunnar W. Reginsson et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

Tianyin Zhou et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Chemistry, Physical

Site-Directed Spin Labeling of DNA Reveals Mismatch-Induced Nanometer Distance Changes between Flanking Nucleotides

Dorith Wunnicke et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2012)

Article Chemistry, Multidisciplinary

Global Structure of a Three-Way Junction in a Phi29 Packaging RNA Dimer Determined Using Site-Directed Spin Labeling

Xiaojun Zhang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Biochemistry & Molecular Biology

A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA

Eric P. Bishop et al.

ACS CHEMICAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity

Tom J. Petty et al.

EMBO JOURNAL (2011)

Editorial Material Multidisciplinary Sciences

BIOPHYSICS Flipping Watson and Crick

Barry Honig et al.

NATURE (2011)

Review Biochemistry & Molecular Biology

The many twists and turns of DNA: template, telomere, tool, and target

Martin Egli et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs

Malka Kitayner et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

The most frequent short sequences in non-coding DNA

Juan A. Subirana et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Crystal Structure of the p53 Core Domain Bound to a Full Consensus Site as a Self-Assembled Tetramer

Yongheng Chen et al.

STRUCTURE (2010)

Article Cell Biology

The Tumor Suppressor p53: From Structures to Drug Discovery

Andreas C. Joerger et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)

Article Chemistry, Multidisciplinary

Human Telomeric Quadruplex Conformations Studied by Pulsed EPR

Vijay Singh et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Chemistry, Multidisciplinary

Relative Orientation of Rigid Nitroxides by PELDOR: Beyond Distance Measurements in Nucleic Acids

Olav Schiemann et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Biochemistry & Molecular Biology

Site-Specific DNA Structural and Dynamic Features Revealed by Nucleotide-Independent Nitroxide Probes

Anna M. Popova et al.

BIOCHEMISTRY (2009)

Article Multidisciplinary Sciences

The role of DNA shape in protein-DNA recognition

Remo Rohs et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Lesion-induced DNA weak structural changes detected by pulsed EPR spectroscopy combined with site-directed spin labelling

Giuseppe Sicoli et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Chemistry, Physical

P53-induced DNA bending: The interplay between p53-ONA and p53-p53 interactions

Yongping Pan et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Review Cell Biology

Transcriptional control of human p53-regulated genes

Todd Riley et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Distance determination in heterogeneous DNA model systems by pulsed EPR

Richard Ward et al.

CHEMBIOCHEM (2007)

Article Biochemistry & Molecular Biology

Computation of nitroxide-nitroxide distances in spin-labeled DNA duplexes

Eric A. Price et al.

BIOPOLYMERS (2007)

Review Biophysics

Long-range distance determinations in biomacromolecules by EPR spectroscopy

Olav Schiemann et al.

QUARTERLY REVIEWS OF BIOPHYSICS (2007)

Article Biochemical Research Methods

Measuring nanometer distances in nucleic acids using a sequence-independent nitroxide probe

Peter Z. Qin et al.

NATURE PROTOCOLS (2007)

Review Biochemistry & Molecular Biology

Recent advances and applications of site-directed spin labeling

Gail E. Fanucci et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)

Article Physics, Atomic, Molecular & Chemical

DeerAnalysis2006 - a comprehensive software package for analyzing pulsed ELDOR data

G. Jeschke et al.

APPLIED MAGNETIC RESONANCE (2006)

Article Biochemistry & Molecular Biology

Comparative binding of p53 to its promoter and DNA recognition elements

RL Weinberg et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)