相关参考文献
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Samuel Kerrien et al.
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MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model
Antony Le Bechec et al.
BMC BIOINFORMATICS (2011)
miRWalk - Database: Prediction of possible miRNA binding sites by walking the genes of three genomes
Harsh Dweep et al.
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Mitotic catastrophe: a mechanism for avoiding genomic instability
Ilio Vitale et al.
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miRTarBase: a database curates experimentally validated microRNA-target interactions
Sheng-Da Hsu et al.
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The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
Damian Szklarczyk et al.
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A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks
Svetoslav Nikolov et al.
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Matteo Osella et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
PuTmiR: A database for extracting neighboring transcription factors of human microRNAs
Sanghamitra Bandyopadhyay et al.
BMC BIOINFORMATICS (2010)
Hsa-miR-125a-3p and hsa-miR-125a-5p are downregulated in non-small cell lung cancer and have inverse effects on invasion and migration of lung cancer cells
Lili Jiang et al.
BMC CANCER (2010)
Dynamical modeling of microRNA action on the protein translation process
Andrei Zinovyev et al.
BMC SYSTEMS BIOLOGY (2010)
An iterative identification procedure for dynamic modeling of biochemical networks
Eva Balsa-Canto et al.
BMC SYSTEMS BIOLOGY (2010)
Examination of the expanding pathways for the regulation of p21 expression and activity
Yong-Sam Jung et al.
CELLULAR SIGNALLING (2010)
MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems
Hector Herranz et al.
GENES & DEVELOPMENT (2010)
Dynamical effects of epigenetic silencing of 14-3-3 sigma expression
Julio Vera et al.
MOLECULAR BIOSYSTEMS (2010)
Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models
Julio Vera et al.
MOLECULAR BIOSYSTEMS (2010)
MicroRNA assassins: factors that regulate the disappearance of miRNAs
Zoya S. Kai et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
miRGen 2.0: a database of microRNA genomic information and regulation
Panagiotis Alexiou et al.
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TransmiR: a transcription factor-microRNA regulation database
Juan Wang et al.
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Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation
Jiri Vohradsky et al.
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Multiple microRNAs rescue from Ras-induced senescence by inhibiting p21Waf1/Cip1
V. Borgdorff et al.
ONCOGENE (2010)
Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3 ' untranslated region
S. Wu et al.
ONCOGENE (2010)
Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis
Younghee Lee et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
MicroRNAs: Target Recognition and Regulatory Functions
David P. Bartel
CELL (2009)
14-3-3σ gene silencing during melanoma progression and its role in cell cycle control and cellular senescence
Julia Schultz et al.
MOLECULAR CANCER (2009)
The Systems Biology Graphical Notation
Nicolas Le Novere et al.
NATURE BIOTECHNOLOGY (2009)
Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms
Kang Tu et al.
NUCLEIC ACIDS RESEARCH (2009)
Human Protein Reference Database-2009 update
T. S. Keshava Prasad et al.
NUCLEIC ACIDS RESEARCH (2009)
miRecords: an integrated resource for microRNA-target interactions
Feifei Xiao et al.
NUCLEIC ACIDS RESEARCH (2009)
Phenotypes and tolerances in the design space of biochemical systems
Michael A. Savageau et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Computational modeling of post-transcriptional gene regulation by microRNAs
Raya Khanin et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2008)
p53-repressed miRNAs are involved with E2F in a feed-forward loop promoting proliferation
Ran Brosh et al.
MOLECULAR SYSTEMS BIOLOGY (2008)
Widespread changes in protein synthesis induced by microRNAs
Matthias Selbach et al.
NATURE (2008)
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
Witold Filipowicz et al.
NATURE REVIEWS GENETICS (2008)
MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc
Baltazar D. Aguda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Computational analysis of miRNA-mediated repression of translation: Implications for models of translation initiation inhibition
Tracy Nissan et al.
RNA (2008)
Computing topological parameters of biological networks
Yassen Assenov et al.
BIOINFORMATICS (2008)
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes
Sheng-Da Hsu et al.
NUCLEIC ACIDS RESEARCH (2008)
Target-specific and global effectors in gene regulation by MicroRNA
Erel Levine et al.
BIOPHYSICAL JOURNAL (2007)
A particle swarm pattern search method for bound constrained global optimization
A. Ismael F. Vaz et al.
JOURNAL OF GLOBAL OPTIMIZATION (2007)
Global and local architecture of the mammalian microRNA-transcription factor regulatory network
Reut Shalgi et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
MicroRNA silencing through RISC recruitment of eIF6
Thimmaiah P. Chendrimada et al.
NATURE (2007)
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
John Tsang et al.
MOLECULAR CELL (2007)
Distance constraints between microRNA target sites dictate efficacy and cooperativity
Pal Saetrom et al.
NUCLEIC ACIDS RESEARCH (2007)
A hexanucleotide element directs microRNA nuclear import
Hun-Way Hwang et al.
SCIENCE (2007)
Physicochemical modelling of cell signalling pathways
Bree B. Aldridge et al.
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A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
Kevin C. Miranda et al.
CELL (2006)
Relief of microRNA-mediated translational repression in human cells subjected to stress
Suvendra N. Bhattacharyya et al.
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Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes
I Rigoutsos et al.
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Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology
H Schmidt et al.
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Target hub proteins serve as master regulators of development in yeast
AR Borneman et al.
GENES & DEVELOPMENT (2006)
TarBase: A comprehensive database of experimentally supported animal microRNA targets
P Sethupathy et al.
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Using process diagrams for the graphical representation of biological networks
H Kitano et al.
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Specificity of microRNA target selection in translational repression
JG Doench et al.
GENES & DEVELOPMENT (2004)
Network biology:: Understanding the cell's functional organization
AL Barabási et al.
NATURE REVIEWS GENETICS (2004)
MicroRNAs: Genomics, biogenesis, mechanism, and function
DP Bartel
CELL (2004)
Structure and function of the feed-forward loop network motif
S Mangan et al.
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The UCSC Genome Browser Database
D Karolchik et al.
NUCLEIC ACIDS RESEARCH (2003)
Extending the method of mathematically controlled comparison to include numerical comparisons
R Alves et al.
BIOINFORMATICS (2000)
Error and attack tolerance of complex networks
R Albert et al.
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HuR regulates p21 mRNA stabilization by UV light
WG Wang et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)