相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Using protein design algorithms to understand the molecular basis of disease caused by protein-DNA interactions: the Pax6 example
Andreu Alibes et al.
NUCLEIC ACIDS RESEARCH (2010)
Comparison of DNA binding across protein superfamilies
Bruno Contreras-Moreira et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
A Multiparameter Network Reveals Extensive Divergence between C. elegans bHLH Transcription Factors
Christian A. Grove et al.
CELL (2009)
Nuance in the double-helix and its role in protein-DNA recognition
Remo Rohs et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors
Michael F. Berger et al.
NATURE PROTOCOLS (2009)
UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
Daniel E. Newburger et al.
NUCLEIC ACIDS RESEARCH (2009)
Experimental determination of the evolvability of a transcription factor
Sebastian J. Maerkl et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Diversity and Complexity in DNA Recognition by Transcription Factors
Gwenael Badis et al.
SCIENCE (2009)
From Nonspecific DNA-Protein Encounter Complexes to the Prediction of DNA-Protein Interactions
Mu Gao et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Crystal structure of E47 neuroD1/Beta2 bHLH domain DNA complex: Heterodimer selectivity and DNA recognition
Antonella Longo et al.
BIOCHEMISTRY (2008)
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
Michael F. Berger et al.
CELL (2008)
Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
Marcus B. Noyes et al.
CELL (2008)
Transcription factor functionality and transcription regulatory networks
Christian A. Grove et al.
MOLECULAR BIOSYSTEMS (2008)
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
Jan Christian Bryne et al.
NUCLEIC ACIDS RESEARCH (2008)
Delta-Notch-and then? Protein interactions and proposed modes of repression by Hes and Hey bHLH factors
Andreas Fischer et al.
NUCLEIC ACIDS RESEARCH (2007)
Structure-based prediction of C2H2 zinc-finger binding specificity:: sensitivity to docking geometry
Trevor W. Siggers et al.
NUCLEIC ACIDS RESEARCH (2007)
A systems approach to measuring the binding energy landscapes of transcription factors
Sebastian J. Maerkl et al.
SCIENCE (2007)
Molecular architecture of the DNA-binding region and its relationship to classification of basic helix-loop-helix proteins
William R. Atchley et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping
Albertha J. M. Walhout
GENOME RESEARCH (2006)
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
Michael F. Berger et al.
NATURE BIOTECHNOLOGY (2006)
DBD: a transcription factor prediction database
Sarah K. Kummerfeld et al.
NUCLEIC ACIDS RESEARCH (2006)
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
JJ Liu et al.
BMC BIOINFORMATICS (2005)
The FoldX web server: an online force field
J Schymkowitz et al.
NUCLEIC ACIDS RESEARCH (2005)
A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks
John S. Reece-Hoyes et al.
GENOME BIOLOGY (2005)
Looking into DNA recognition: zinc finger binding specificity
G Paillard et al.
NUCLEIC ACIDS RESEARCH (2004)
A HANDful of questions: the molecular biology of the heart and neural crest derivatives (HAND)-subclass of basic helix-loop-helix transcription factors
AB Firulli
GENE (2003)
X-ray structures of Myc-Max and Mad-Max recognizing DNA: Molecular bases of regulation by proto-oncogenic transcription factors
SK Nair et al.
CELL (2003)
Probabilistic code for DNA recognition by proteins of the EGR family
PV Benos et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
R Guerois et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Vertebrate hairy and Enhancer of split related proteins: transcriptional repressors regulating cellular differentiation and embryonic patterning
RL Davis et al.
ONCOGENE (2001)
Rearrangement of side-chains in a zif268 mutant highlights the complexities of zinc finger-DNA recognition
JC Miller et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Probing the Escherichia coli transcriptional activator MarA using alanine-scanning mutagenesis:: Residues important for DNA binding and activation
WK Gillette et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Protein interaction mapping in C-elegans using proteins involved in vulval development
AJM Walhout et al.
SCIENCE (2000)
Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms
ME Massari et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Establishment of distinct MyoD, E2A and twist DNA binding specificities by different basic Region-DNA conformations
T Kophengnavong et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)