相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genome-wide detection of novel regulatory RNAs in E. coli
Rahul Raghavan et al.
GENOME RESEARCH (2011)
Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?
Maureen Kiley Thomason et al.
ANNUAL REVIEW OF GENETICS, VOL 44 (2010)
Identification of genes for small non-coding RNAs that belong to the regulon of the two-component regulatory system CiaRH in Streptococcus
Patrick Marx et al.
BMC GENOMICS (2010)
Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype
Luay F. Abu-Qatouseh et al.
JOURNAL OF MOLECULAR MEDICINE-JMM (2010)
Small RNAs promote mRNA stability to activate the synthesis of virulence factors
Dimitri Podkaminski et al.
MOLECULAR MICROBIOLOGY (2010)
An antisense RNA that governs the expression kinetics of a multifunctional virulence gene
Eun-Jin Lee et al.
MOLECULAR MICROBIOLOGY (2010)
The primary transcriptome of the major human pathogen Helicobacter pylori
Cynthia M. Sharma et al.
NATURE (2010)
Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
Chantal Bohn et al.
NUCLEIC ACIDS RESEARCH (2010)
Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi
Suresh V. Chinni et al.
NUCLEIC ACIDS RESEARCH (2010)
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts
C. Lorenz et al.
NUCLEIC ACIDS RESEARCH (2010)
Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions
Marie Beaume et al.
PLOS ONE (2010)
A Staphylococcus aureus Small RNA Is Required for Bacterial Virulence and Regulates the Expression of an Immune-Evasion Molecule
Svetlana Chabelskaya et al.
PLOS PATHOGENS (2010)
Regulatory RNAs in Bacteria
Lauren S. Waters et al.
CELL (2009)
Uropathogenic Escherichia coli AL511 requires flagellum to enter renal collecting duct cells
Christophe Pichon et al.
CELLULAR MICROBIOLOGY (2009)
Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles
Antonin Marchais et al.
GENOME RESEARCH (2009)
The Listeria transcriptional landscape from saprophytism to virulence
Alejandro Toledo-Arana et al.
NATURE (2009)
A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
Thomas Geissmann et al.
NUCLEIC ACIDS RESEARCH (2009)
A Genome-Wide Analysis of Small Regulatory RNAs in the Human Pathogen Group A Streptococcus
Nataly Perez et al.
PLOS ONE (2009)
Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli
Alfredo Mendoza-Vargas et al.
PLOS ONE (2009)
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Marie Touchon et al.
PLOS GENETICS (2009)
Small RNA gene identification and mRNA target predictions in bacteria
Christophe Pichon et al.
BIOINFORMATICS (2008)
Impact of the RNA chaperone Hfq on the fitness and virulence potential of uropathogenic Escherichia coli
Richard R. Kulesus et al.
INFECTION AND IMMUNITY (2008)
Invasive group B streptococcal infections in infants, France
Claire Poyart et al.
EMERGING INFECTIOUS DISEASES (2008)
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
Verena Pfeiffer et al.
MOLECULAR MICROBIOLOGY (2007)
Identification of the genes directly controlled by the response regulator CiaR in Streptococcus pneumoniae:: five out of 15 promoters drive expression of small non-coding RNAs
Alexander Halfmann et al.
MOLECULAR MICROBIOLOGY (2007)
Development of intracellular bacterial communities of uropathogenic Escherichia coli depends on type 1 pili
Kelly J. Wright et al.
CELLULAR MICROBIOLOGY (2007)
An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin
Mitsuoki Kawano et al.
MOLECULAR MICROBIOLOGY (2007)
Translational control and target recognition by Escherichia coli small RNAs in vivo
Johannes H. Urban et al.
NUCLEIC ACIDS RESEARCH (2007)
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
Carleton L. Kingsford et al.
GENOME BIOLOGY (2007)
Proteins that interact with bacterial small RNA regulators
Christophe Pichon et al.
FEMS MICROBIOLOGY REVIEWS (2007)
Regulatory mechanisms employed by cis-encoded antisense RNAs
Sabine Brantl
CURRENT OPINION IN MICROBIOLOGY (2007)
PSoL: a positive sample only learning algorithm for finding non-coding RNA genes
Chunlin Wang et al.
BIOINFORMATICS (2006)
Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536
Bianca Hochhut et al.
MOLECULAR MICROBIOLOGY (2006)
Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model
Nozomu Yachie et al.
GENE (2006)
Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coli
V Douchin et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
An internal antisense RNA regulates expression of the photosynthesis gene isiA
U Dühring et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli:: A comparative genomics approach
SL Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
The role of RNAs in the regulation of virulence-gene expression
P Romby et al.
CURRENT OPINION IN MICROBIOLOGY (2006)
Demonstration of regulatory cross-talk between P fimbriae and type 1 fimbriae in uropathogenic Escherichia coli
NJ Holden et al.
MICROBIOLOGY-SGM (2006)
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Andrew V. Uzilov et al.
BMC BIOINFORMATICS (2006)
Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains
C Pichon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Global epithelial cell transcriptional responses reveal Streptococcus pyogenes Fas regulator activity association with bacterial aggressiveness
M Klenk et al.
CELLULAR MICROBIOLOGY (2005)
Envelope stress responses and Gram-negative bacterial pathogenesis
TL Raivio
MOLECULAR MICROBIOLOGY (2005)
A small bacterial RNA regulates a putative ABC transporter
M Antal et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Identification of cyanobacterial non-coding RNAs by comparative genome analysis
IM Axmann et al.
GENOME BIOLOGY (2005)
Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming
P Saetrom et al.
NUCLEIC ACIDS RESEARCH (2005)
sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes
J Livny et al.
NUCLEIC ACIDS RESEARCH (2005)
Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
M Kawano et al.
NUCLEIC ACIDS RESEARCH (2005)
The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide
J Vogel et al.
CURRENT BIOLOGY (2004)
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
J Vogel et al.
NUCLEIC ACIDS RESEARCH (2003)
Intergenic sequence inspector: searching and identifying bacterial RNAs
C Pichon et al.
BIOINFORMATICS (2003)
Global analysis of small RNA and mRNA targets of Hfq
AX Zhang et al.
MOLECULAR MICROBIOLOGY (2003)
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
B Tjaden et al.
NUCLEIC ACIDS RESEARCH (2002)
Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease
P Glaser et al.
MOLECULAR MICROBIOLOGY (2002)
Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli
M Kawano et al.
MOLECULAR MICROBIOLOGY (2002)
Searching for RNA genes using base-composition statistics
P Schattner
NUCLEIC ACIDS RESEARCH (2002)
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome
S Chen et al.
BIOSYSTEMS (2002)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)
MELTING, computing the melting temperature of nucleic acid duplex
N Le Novère
BIOINFORMATICS (2001)
RNAMotif, an RNA secondary structure definition and search algorithm
TJ Macke et al.
NUCLEIC ACIDS RESEARCH (2001)
Emerging views on tmRNA-mediated protein tagging and ribosome rescue
R Gillet et al.
MOLECULAR MICROBIOLOGY (2001)
A computational approach to identify genes for functional RNAs in genomic sequences
RJ Carter et al.
NUCLEIC ACIDS RESEARCH (2001)
Computational identification of noncoding RNAs in E-coli by comparative genomics
E Rivas et al.
CURRENT BIOLOGY (2001)
Prediction of rho-independent transcriptional terminators in Escherichia coli
EA Lesnik et al.
NUCLEIC ACIDS RESEARCH (2001)
Identification of novel small RNAs using comparative genomics and microarrays
KM Wassarman et al.
GENES & DEVELOPMENT (2001)
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
L Argaman et al.
CURRENT BIOLOGY (2001)
Biofilm formation in a hydrodynamic environment by novel FimH variants and ramifications for virulence
MA Schembri et al.
INFECTION AND IMMUNITY (2001)
afa-8 Gene cluster is carried by a pathogenicity island inserted into the tRNAPhe of human and bovine pathogenic Escherichia coli isolates
L Lalioui et al.
INFECTION AND IMMUNITY (2001)
A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans
Marie-Kim Chaveroche et al.
NUCLEIC ACIDS RESEARCH (2000)
Identification of group B streptococcal Sip protein, which elicits cross-protective immunity
BR Brodeur et al.
INFECTION AND IMMUNITY (2000)
The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
ML Urbanowski et al.
MOLECULAR MICROBIOLOGY (2000)
fhlA repression by OxyS RNA:: Kissing complex formation at two sites results in a stable antisense-target RNA complex
L Argaman et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
KA Datsenko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)