4.8 Article

PoSSuM: a database of similar protein-ligand binding and putative pockets

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server

Bing Xiong et al.

BMC BIOINFORMATICS (2010)

Article Chemistry, Medicinal

Alignment-Free Ultra-High-Throughput Comparison of Druggable Protein-Ligand Binding Sites

Nathanael Weill et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2010)

Article Chemistry, Medicinal

High-Throughput Virtual Screening of Proteins Using GRID Molecular Interaction Fields

Simone Sciabola et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2010)

Article Computer Science, Artificial Intelligence

Multi-sorting algorithm for finding pairs of similar short substrings from large-scale string data

Takeaki Uno

KNOWLEDGE AND INFORMATION SYSTEMS (2010)

Article Biochemistry & Molecular Biology

Detection of multiscale pockets on protein surfaces using mathematical morphology

Takeshi Kawabata

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemical Research Methods

The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures

Fred P. Davis et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Article Multidisciplinary Sciences

Fast screening of protein surfaces using geometric invariant fingerprints

Shuangye Yin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemical Research Methods

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

John A. Capra et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

The first structure of dipeptidyl-peptidase III provides insight into the catalytic mechanism and mode of substrate binding

Pravas Kumar Baral et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions

Ryoichi Minai et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

The Gene Ontology project in 2008

Midori A. Harris et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Data growth and its impact on the SCOP database: new developments

Antonina Andreeva et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Fold independent structural comparisons of protein-ligand binding sites for exploring functional relationships

ND Gold et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

SitesBase: a database for structure-based protein-ligand binding site comparisons

Nicola D. Gold et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemical Research Methods

Pocketome via comprehensive identification and classification of ligand binding envelopes

JH An et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Article Biochemistry & Molecular Biology

TM-align: a protein structure alignment algorithm based on the TM-score

Y Zhang et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

PDBSprotEC: A web-accessible database linking PDB chains to EC numbers via SwissProt

ACR Martin

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

Recognition of functional sites in protein structures

A Shulman-Peleg et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Neprilysin regulates amyloid beta peptide levels

RA Marr et al.

JOURNAL OF MOLECULAR NEUROSCIENCE (2004)

Article Biochemistry & Molecular Biology

A new method to detect related function among proteins independent of sequence and fold homology

S Schmitt et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)