4.8 Article

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction

Osvaldo Zagordi et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2010)

Review Genetics & Heredity

APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies - the next generation

Michael L. Metzker

NATURE REVIEWS GENETICS (2010)

Article Biochemistry & Molecular Biology

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

Marco Albrecht et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

Biopython: freely available Python tools for computational molecular biology and bioinformatics

Peter J. A. Cock et al.

BIOINFORMATICS (2009)

Article Virology

Mixed Infection and the Genesis of Influenza Virus Diversity

Elodie Ghedin et al.

JOURNAL OF VIROLOGY (2009)

Article Multidisciplinary Sciences

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

Sohrab P. Shah et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Intra-tumor heterogeneity of MLH1 promoter methylation revealed by deep single molecule bisulfite sequencing

Katherine E. Varley et al.

NUCLEIC ACIDS RESEARCH (2009)

Proceedings Paper Biochemistry & Molecular Biology

Genome-wide Mutational Diversity in an Evolving Population of Escherichia coli

J. E. Barrick et al.

EVOLUTION: THE MOLECULAR LANDSCAPE (2009)

Article Multidisciplinary Sciences

Sequencing the nuclear genome of the extinct woolly mammoth

Webb Miller et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

Juliane C. Dohm et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

Viral population estimation using pyrosequencing

Nicholas Eriksson et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance

Chunlin Wang et al.

GENOME RESEARCH (2007)

Article Biotechnology & Applied Microbiology

Accuracy and quality of massively parallel DNA pyrosequencing

Susan M. Huse et al.

GENOME BIOLOGY (2007)

Article Biochemistry & Molecular Biology

DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations

Christian Hoffmann et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

Recco: recombination analysis using cost optimization

J Maydt et al.

BIOINFORMATICS (2006)

Review Biotechnology & Applied Microbiology

Bias and artifacts in multitemplate polymerase chain reactions (PCR)

T Kanagawa

JOURNAL OF BIOSCIENCE AND BIOENGINEERING (2003)

Article Biochemistry & Molecular Biology

Geno2pheno:: estimating phenotypic drug resistance from HIV-1 genotypes

N Beerenwinkel et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Multidisciplinary Sciences

Molecular evidence of HIV-1 transmission in a criminal case

ML Metzker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Computer Science, Artificial Intelligence

Geno2pheno: Interpreting genotypic HIV drug resistance tests

N Beerenwinkel et al.

IEEE INTELLIGENT SYSTEMS (2001)

Article Computer Science, Interdisciplinary Applications

Testing the equality of distributions of random vectors with categorical components

D Nettleton et al.

COMPUTATIONAL STATISTICS & DATA ANALYSIS (2001)

Review Medicine, General & Internal

Evolutionary and immunological implications of contemporary HIV-1 variation

B Korber et al.

BRITISH MEDICAL BULLETIN (2001)