4.8 Article

Using DNA mechanics to predict in vitro nucleosome positions and formation energies

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

The DNA-encoded nucleosome organization of a eukaryotic genome

Noam Kaplan et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

DNA physical properties determine nucleosome occupancy from yeast to fly

Vincent Miele et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

Genomic sequence is highly predictive of local nucleosome depletion

Guo-Cheng Yuan et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Genetics & Heredity

A high- resolution atlas of nucleosome occupancy in yeast

William Lee et al.

NATURE GENETICS (2007)

Article Biochemistry & Molecular Biology

A novel roll-and-slide mechanism of DNA folding in chromatin: Implications for nucleosome positioning

Michael Y. Tolstorukov et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Nucleosome positioning signals in genomic DNA

Heather E. Peckham et al.

GENOME RESEARCH (2007)

Article Genetics & Heredity

Nucleosome positions predicted through comparative genomics

Ilya P. Ioshikhes et al.

NATURE GENETICS (2006)

Article Multidisciplinary Sciences

A genomic code for nucleosome positioning

Eran Segal et al.

NATURE (2006)

Article Genetics & Heredity

Gene expression from random libraries of yeast promoters

M Ligr et al.

GENETICS (2006)

Article Biochemistry & Molecular Biology

Protein-DNA binding specificity predictions with structural models

AV Morozov et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Identification and distinct regulation of yeast TATA box-containing genes

AD Basehoar et al.

Review Biochemistry & Molecular Biology

The nucleosome: From genomic organization to genomic regulation

S Khorasanizadeh

Article Biochemistry & Molecular Biology

A determining influence for CpG dinucleotides on nucleosome positioning in vitro

CS Davey et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Nucleosomal locations of dominant DNA sequence motifs for histone -: DNA interactions and nucleosome positioning

A Thåström et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemical Research Methods

Construction, analysis, and transcription of model nucleosomal templates

W Walter et al.

METHODS (2004)

Article Biochemical Research Methods

Measurement of histone-DNA interaction free energy in nucleosomes

A Thåström et al.

METHODS (2004)

Article Biochemistry & Molecular Biology

Nucleosomes unfold completely at a transcriptionally active promoter

H Boeger et al.

MOLECULAR CELL (2003)

Article Multidisciplinary Sciences

The structure of DNA in the nucleosome core

TJ Richmond et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2

SR Kassabov et al.

MOLECULAR AND CELLULAR BIOLOGY (2002)

Review Biophysics

Role of DNA sequence in nucleosome stability and dynamics

J Widom

QUARTERLY REVIEWS OF BIOPHYSICS (2001)

Article Genetics & Heredity

Zero Background Yeast Reporter Plasmids

K Melcher et al.