4.8 Article

An evaluation of custom microarray applications: the oligonucleotide design challenge

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Diego Martinez et al.

NATURE BIOTECHNOLOGY (2008)

Article Biochemical Research Methods

Optimized design and assessment of whole genome tiling arrays

Stefan Graef et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

Optimization of probe coverage for high-resolution oligonucleotide aCGH

Doron Lipson et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

OligoSpawn: a software tool for the design of overgo probes from large unigene datasets

J Zheng et al.

BMC BIOINFORMATICS (2006)

Article Biochemical Research Methods

OligoFaktory: a visual tool for interactive oligonucleotide design

C Schretter et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

Design of long oligonucleotide probes for functional gene detection in a microbial community

WH Chung et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

OligoWiz 2.0 - integrating sequence feature annotation into the design of microarray probes

R Wernersson et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

YODA: selecting signature oligonucleotides

EK Nordberg

BIOINFORMATICS (2005)

Article Biochemical Research Methods

GoArrays: highly dynamic and efficient microarray probe design

S Rimour et al.

BIOINFORMATICS (2005)

Article Biochemical Research Methods

Automated generation of heuristics for biological sequence comparison

GS Slater et al.

BMC BIOINFORMATICS (2005)

Article Biochemical Research Methods

ROSO: optimizing oligonucleotide probes for microarrays

N Reymond et al.

BIOINFORMATICS (2004)

Article Biochemical Research Methods

G-PRIMER: greedy algorithm for selecting minimal primer set

J Wang et al.

BIOINFORMATICS (2004)

Article Biochemical Research Methods

Automatic design of gene-specific sequence tags for genome-wide functional studies

V Thareau et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Mfold web server for nucleic acid folding and hybridization prediction

M Zuker

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

PROBEmer: a web-based software tool for selecting optimal DNA oligos

SJ Emrich et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

JM Rouillard et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemical Research Methods

Selection of oligonucleotide probes for protein coding sequences

XW Wang et al.

BIOINFORMATICS (2003)

Article Biotechnology & Applied Microbiology

Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays

HY Wang et al.

GENOME BIOLOGY (2003)

Article Biochemical Research Methods

Oligodb - interactive design of oligo DNA for transcription profiling of human genes

R Mrowka et al.

BIOINFORMATICS (2002)

Article Biochemical Research Methods

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis

D Xu et al.

BIOINFORMATICS (2002)

Article Biochemical Research Methods

Selecting signature oligonucleotides to identify organisms using DNA arrays

L Kaderali et al.

BIOINFORMATICS (2002)

Article Biochemistry & Molecular Biology

Optimization of oligonucleotide-based DNA microarrays -: art. no. e51

A Relógio et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemical Research Methods

MELTING, computing the melting temperature of nucleic acid duplex

N Le Novère

BIOINFORMATICS (2001)

Article Biochemical Research Methods

Selection of optimal DNA oligos for gene expression arrays

FG Li et al.

BIOINFORMATICS (2001)

Article Biotechnology & Applied Microbiology

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

TR Hughes et al.

NATURE BIOTECHNOLOGY (2001)

Article Biochemical Research Methods

Efficient primer design algorithms

T Kämpke et al.

BIOINFORMATICS (2001)

Article Biochemical Research Methods

PrimeArray: genome-scale primer design for DNA-microarray construction

G Raddatz et al.

BIOINFORMATICS (2001)

Article Biochemistry & Molecular Biology

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

MD Kane et al.

NUCLEIC ACIDS RESEARCH (2000)