4.8 Article

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species

Xin Zhou et al.

BMC GENOMICS (2007)

Review Biochemical Research Methods

Enrichment or depletion of a GO category within a class of genes: which test?

Isabelle Rivals et al.

BIOINFORMATICS (2007)

Article Mathematical & Computational Biology

Controlling the false discovery rate with constraints: The Newman-Keuls test revisited

Juliet Popper Shaffer

BIOMETRICAL JOURNAL (2007)

Article Biotechnology & Applied Microbiology

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

Pedro Carmona-Saez et al.

GENOME BIOLOGY (2007)

Article Biochemical Research Methods

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

Adrian Alexa et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

ErmineJ: Tool for functional analysis of gene expression data sets

HK Lee et al.

BMC BIOINFORMATICS (2005)

Article Biochemical Research Methods

OntologyTraverser: an R package for GO analysis

A Young et al.

BIOINFORMATICS (2005)

Article Biotechnology & Applied Microbiology

L2L: a simple tool for discovering the hidden significance in microarray expression data

JC Newman et al.

GENOME BIOLOGY (2005)

Article Biochemical Research Methods

FatiGO:: a web tool for finding significant associations of Gene Ontology terms with groups of genes

F Al-Shahrour et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

GFINDer:: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining

M Masseroli et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

T Beissbarth et al.

BIOINFORMATICS (2004)

Article Biochemical Research Methods

NetAffx gene ontology mining tool: A visual approach for microarray data analysis

J Cheng et al.

BIOINFORMATICS (2004)

Article Biochemical Research Methods

THEA: ontology-driven analysis of microarray data

C Pasquier et al.

BIOINFORMATICS (2004)

Article Biochemical Research Methods

CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology

NH Shah et al.

BIOINFORMATICS (2004)

Article Biotechnology & Applied Microbiology

GOToolBox: functional analysis of gene datasets based on Gene Ontology

D Martin et al.

GENOME BIOLOGY (2004)

Article Biochemical Research Methods

Characterizing gene sets with FuncAssociate

GF Berriz et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate

S Draghici et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemical Research Methods

GeneMerge - post-genomic analysis, data mining, and hypothesis testing

CI Castillo-Davis et al.

BIOINFORMATICS (2003)

Article Biotechnology & Applied Microbiology

GoMiner: a resource for biological interpretation of genomic and proteomic data

BR Zeeberg et al.

GENOME BIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Identifying biological themes within lists of genes with EASE

DA Hosack et al.

GENOME BIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Profiling gene expression using onto-express

P Khatri et al.

GENOMICS (2002)