4.6 Review

The population genomics of plant adaptation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

Jonathan K. Pritchard et al.

CURRENT BIOLOGY (2010)

Article Genetics & Heredity

Bayesian Computation and Model Selection Without Likelihoods

Christoph Leuenberger et al.

GENETICS (2010)

Review Biochemistry & Molecular Biology

Population genetic inference from genomic sequence variation

John E. Pool et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Population differentiation as a test for selective sweeps

Hua Chen et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Natural Selection on Synonymous and Nonsynonymous Mutations Shapes Patterns of Polymorphism in Populus tremula

Par K. Ingvarsson

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Biochemistry & Molecular Biology

Measuring the Sensitivity of Single-locus Neutrality Tests Using a Direct Perturbation Approach

Daniel Garrigan et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Biochemistry & Molecular Biology

Isolation with Migration Models for More Than Two Populations

Jody Hey

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Biochemistry & Molecular Biology

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

Toni I. Gossmann et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Genetics & Heredity

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

Thomas L. Turner et al.

NATURE GENETICS (2010)

Review Plant Sciences

Introgression of fitness genes across a ploidy barrier

Mark A. Chapman et al.

NEW PHYTOLOGIST (2010)

Article Multidisciplinary Sciences

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

Stephan Ossowski et al.

SCIENCE (2010)

Article Computer Science, Theory & Methods

Non-linear regression models for Approximate Bayesian Computation

Michael G. B. Blum et al.

STATISTICS AND COMPUTING (2010)

Article Genetics & Heredity

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

Talia Karasov et al.

PLOS GENETICS (2010)

Article Genetics & Heredity

Evidence for Pervasive Adaptive Protein Evolution in Wild Mice

Daniel L. Halligan et al.

PLOS GENETICS (2010)

Article Genetics & Heredity

The Scale of Population Structure in Arabidopsis thaliana

Alexander Platt et al.

PLOS GENETICS (2010)

Article Genetics & Heredity

Population Genetic Inference From Resequencing Data

Rong Jiang et al.

GENETICS (2009)

Article Biochemistry & Molecular Biology

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

Peter D. Keightley et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

Darwinian and demographic forces affecting human protein coding genes

Rasmus Nielsen et al.

GENOME RESEARCH (2009)

Review Biochemistry & Molecular Biology

Genomic Patterns of Adaptive Divergence between Chromosomally Differentiated Sunflower Species

Jared L. Strasburg et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

Adam Eyre-Walker et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Editorial Material Biochemistry & Molecular Biology

D vs. G(ST): Response to Heller and Siegismund (2009) and Ryman and Leimar (2009)

Lou Jost

MOLECULAR ECOLOGY (2009)

Article Multidisciplinary Sciences

Population genomics of domestic and wild yeasts

Gianni Liti et al.

NATURE (2009)

Review Genetics & Heredity

Effective population size and patterns of molecular evolution and variation

Brian Charlesworth

NATURE REVIEWS GENETICS (2009)

Review Genetics & Heredity

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang et al.

NATURE REVIEWS GENETICS (2009)

Review Plant Sciences

A comparative view of the evolution of grasses under domestication

Sylvain Glemin et al.

NEW PHYTOLOGIST (2009)

Article Multidisciplinary Sciences

Recent speciation associated with the evolution of selfing in Capsella

John Paul Foxe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

The frequency of polyploid speciation in vascular plants

Troy E. Wood et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Ecology

Coalescent genealogy samplers: windows into population history

Mary K. Kuhner

TRENDS IN ECOLOGY & EVOLUTION (2009)

Review Genetics & Heredity

Pervasive Natural Selection in the Drosophila Genome?

Guy Sella et al.

PLOS GENETICS (2009)

Article Genetics & Heredity

The Role of Geography in Human Adaptation

Graham Coop et al.

PLOS GENETICS (2009)

Review Ecology

The Impact of Natural Selection on the Genome: Emerging Patterns in Drosophila and Arabidopsis

Stephen I. Wright et al.

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2008)

Article Biochemical Research Methods

A flexible forward simulator for populations subject to selection and demography

Ryan D. Hernandez

BIOINFORMATICS (2008)

Review Plant Sciences

Genomic consequences of selection on self-incompatibility genes

Mikkel Heide Schierup et al.

CURRENT OPINION IN PLANT BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Selection on amino acid substitutions in Arabidopsis

John Paul Foxe et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Biochemistry & Molecular Biology

Polyploid speciation did not confer instant reproductive isolation in Capsella (Brassicaceae)

Tanja Slotte et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Biochemistry & Molecular Biology

The McDonald-Kreitman test and slightly deleterious mutations

Jane Charlesworth et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Biochemistry & Molecular Biology

Plant reproductive systems and evolution during biological invasion

Spencer C. H. Barrett et al.

MOLECULAR ECOLOGY (2008)

Article Biochemistry & Molecular Biology

GST and its relatives do not measure differentiation

Lou Jost

MOLECULAR ECOLOGY (2008)

Review Biotechnology & Applied Microbiology

Next-generation DNA sequencing

Jay Shendure et al.

NATURE BIOTECHNOLOGY (2008)

Article Multidisciplinary Sciences

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

Jeffrey Ross-Ibarra et al.

PLOS ONE (2008)

Article Genetics & Heredity

Demographic history of European populations of Arabidopsis thaliana

Olivier Francois et al.

PLOS GENETICS (2008)

Article Genetics & Heredity

Assessing the evolutionary impact of amino acid mutations in the human genome

Adam R. Boyko et al.

PLOS GENETICS (2008)

Article Cell Biology

A genomic view of introgression and hybrid speciation

Eric J. Baack et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)

Article Biochemistry & Molecular Biology

A new approach to estimate parameters of speciation models with application to apes

Celine Becquet et al.

GENOME RESEARCH (2007)

Article Genetics & Heredity

Recombination and linkage disequilibrium in Arabidopsis thaliana

Sung Kim et al.

NATURE GENETICS (2007)

Article Genetics & Heredity

Genome-wide patterns of nucleotide polymorphism in domesticated rice

Ana L. Caicedo et al.

PLOS GENETICS (2007)

Article Biochemistry & Molecular Biology

Grinding up wheat:: A massive loss of nucleotide diversity since domestication

A. Haudry et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Genetics & Heredity

Inference of population structure under a Dirichlet process model

John P. Huelsenbeck et al.

GENETICS (2007)

Article Genetics & Heredity

The structure of linkage disequilibrium around a selective sweep

Gil McVean

GENETICS (2007)

Article Biochemistry & Molecular Biology

Single gene-mediated shift in pollinator attraction in Petunia

Maria Elena Hoballah et al.

PLANT CELL (2007)

Article Genetics & Heredity

Controlling the false-positive rate in multilocus genome scans for selection

Kevin R. Thornton et al.

GENETICS (2007)

Article Biochemistry & Molecular Biology

Gene, phenotype and function: GLABROUS1 and resistance to herbivory in natural populations of Arabidopsis lyrata

Maarit Kivimaki et al.

MOLECULAR ECOLOGY (2007)

Article Genetics & Heredity

Soft sweeps III: The signature of positive selection from recurrent mutation

Pleuni S. Pennings et al.

PLOS GENETICS (2006)

Review Genetics & Heredity

Modern computational approaches for analysing molecular genetic variation data

Paul Marjoram et al.

NATURE REVIEWS GENETICS (2006)

Article Genetics & Heredity

Inferring the demographic history and rate of adaptive substitution in Drosophila

Haipeng Li et al.

PLOS GENETICS (2006)

Article Biochemistry & Molecular Biology

The rate of adaptive evolution in enteric bacteria

Jane Charlesworth et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Biochemistry & Molecular Biology

How reliable are empirical genomic scans for selective sweeps?

Kosuke M. Teshima et al.

GENOME RESEARCH (2006)

Article Biochemistry & Molecular Biology

A unique recent origin of the allotetraploid species Arabidopsis suecica:: Evidence from nuclear DNA markers

Mattias Jakobsson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Biochemistry & Molecular Biology

A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome

Christopher Toomajian et al.

PLOS BIOLOGY (2006)

Correction Biochemistry & Molecular Biology

A map of recent positive selection in the human genome (vol 4, pg 154, 2006)

BF Voight et al.

PLOS BIOLOGY (2006)

Article Biochemical Research Methods

LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters

MK Kuhner

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

A map of recent positive selection in the human genome

BF Voight et al.

PLOS BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Genomic scans for selective sweeps using SNP data

R Nielsen et al.

GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

The pattern of polymorphism in Arabidopsis thaliana

M Nordborg et al.

PLOS BIOLOGY (2005)

Article Multidisciplinary Sciences

The effects of artificial selection of the maize genome

SI Wright et al.

SCIENCE (2005)

Review Biochemistry & Molecular Biology

Molecular population genetics and the search for adaptive evolution in plants

SI Wright et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Review Genetics & Heredity

Molecular signatures of natural selection

R Nielsen

ANNUAL REVIEW OF GENETICS (2005)

Review Developmental Biology

From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development

C Alonso-Blanco et al.

INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Identifying adaptive genetic divergence among populations from genome scans

MA Beaumont et al.

MOLECULAR ECOLOGY (2004)

Article Multidisciplinary Sciences

Pattern of polymorphism after strong artificial selection in a domestication event

H Innan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Selection versus demography: A multilocus investigation of the domestication process in maize

MI Tenaillon et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Genetics & Heredity

Linkage disequilibrium as a signature of selective sweeps

Y Kim et al.

GENETICS (2004)

Article Multidisciplinary Sciences

Detecting recent positive selection in the human genome from haplotype structure

PC Sabeti et al.

NATURE (2002)

Article Multidisciplinary Sciences

Signature of balancing selection in Arabidopsis

DC Tian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

The cost of inbreeding in Arabidopsis

CD Bustamante et al.

NATURE (2002)

Article Multidisciplinary Sciences

Adaptive protein evolution in Drosophila

NGC Smith et al.

NATURE (2002)

Article Biochemical Research Methods

Generating samples under a Wright-Fisher neutral model of genetic variation

RR Hudson

BIOINFORMATICS (2002)

Review Ecology

Statistical methods for detecting molecular adaptation

ZH Yang et al.

TRENDS IN ECOLOGY & EVOLUTION (2000)