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Fabian Erdel et al.
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Ronen Sadeh et al.
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Zhenhai Zhang et al.
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Irene M. Min et al.
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Yuanxin Xi et al.
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Stable and dynamic nucleosome states during a meiotic developmental process
Liye Zhang et al.
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Anton Valouev et al.
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Norman Zielke et al.
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CTCF-mediated functional chromatin interactome in pluripotent cells
Lusy Handoko et al.
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Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes
David Martin et al.
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The nucleosome map of the mammalian liver
Zhaoyu Li et al.
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Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions
Razvan V. Chereji et al.
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Chuong D. Pham et al.
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Maiwen Caudron-Herger et al.
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Peng Cui et al.
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Next generation sequencing in functional genomics
Thomas Werner
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High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
Assaf Weiner et al.
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Ho-Ryun Chung et al.
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Xiaochun Fan et al.
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Michael P. Schnetz et al.
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Widespread remodeling of mid-coding sequence nucleosomes by Isw1
Itay Tirosh et al.
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Differential expression analysis for sequence count data
Simon Anders et al.
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Poly(dA:dT) tracts: major determinants of nucleosome organization
Eran Segal et al.
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Suresh Cuddapah et al.
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Da Wei Huang et al.
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Yong Zhang et al.
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Vladimir B. Teif et al.
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Lena Ho et al.
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
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Dynamic regulation of nucleosome positioning in the human genome
Dustin E. Schones et al.
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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
Xi Chen et al.
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Anton Valouev et al.
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Nucleosome organization in the Drosophila genome
Travis N. Mavrich et al.
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Yutao Fu et al.
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Model-based Analysis of ChIP-Seq (MACS)
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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Tarjei S. Mikkelsen et al.
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Nucleosome positions predicted through comparative genomics
Ilya P. Ioshikhes et al.
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CL Woodcock et al.
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Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation
YH Fan et al.
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GC Yuan et al.
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YH Fan et al.
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Multiple nucleosome positioning sites regulate the CTCF-mediated insulator function of the H19 imprinting control region
M Kanduri et al.
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