相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Genome-wide Measurement of RNA Folding Energies
Yue Wan et al.
MOLECULAR CELL (2012)
Global Analysis of RNA Secondary Structure in Two Metazoans
Fan Li et al.
CELL REPORTS (2012)
Prospects for Riboswitch Discovery and Analysis
Ronald R. Breaker
MOLECULAR CELL (2011)
Understanding the transcriptome through RNA structure
Yue Wan et al.
NATURE REVIEWS GENETICS (2011)
Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
Julius B. Lucks et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Genome-wide measurement of RNA secondary structure in yeast
Michael Kertesz et al.
NATURE (2010)
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
Jason G. Underwood et al.
NATURE METHODS (2010)
SHAPE-directed RNA secondary structure prediction
Justin T. Low et al.
METHODS (2010)
Genome-Wide Double-Stranded RNA Sequencing Reveals the Functional Significance of Base-Paired RNAs in Arabidopsis
Qi Zheng et al.
PLOS GENETICS (2010)
VARNA: Interactive drawing and editing of the RNA secondary structure
Kevin Darty et al.
BIOINFORMATICS (2009)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Bidirectional promoters generate pervasive transcription in yeast
Zhenyu Xu et al.
NATURE (2009)
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
Helen Neil et al.
NATURE (2009)
Architecture and secondary structure of an entire HIV-1 RNA genome
Joseph M. Watts et al.
NATURE (2009)
Accurate SHAPE-directed RNA structure determination
Katherine E. Deigan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
SHRiMP: Accurate Mapping of Short Color-space Reads
Stephen M. Rumble et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
A large genome center's improvements to the Illumina sequencing system
Michael A. Quail et al.
NATURE METHODS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
Kevin A. Wilkinson et al.
PLOS BIOLOGY (2008)
Novel Low Abundance and Transient RNAs in Yeast Revealed by Tiling Microarrays and Ultra High-Throughput Sequencing Are Not Conserved Across Closely Related Yeast Species
Albert Lee et al.
PLOS GENETICS (2008)
RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble
Y Ding et al.
RNA (2005)
RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
EJ Merino et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
A nomenclature for all signal recognition particle RNAs
C Zwieb et al.
RNA (2005)
Java Treeview-extensible visualization of microarray data
AJ Saldanha
BIOINFORMATICS (2004)
分享论文
