4.8 Article

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Differential analysis of gene regulation at transcript resolution with RNA-seq

Cole Trapnell et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

El-ad David Amir et al.

NATURE BIOTECHNOLOGY (2013)

Review Genetics & Heredity

Single-cell sequencing-based technologies will revolutionize whole-organism science

Ehud Shapiro et al.

NATURE REVIEWS GENETICS (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Review Developmental Biology

Myoblast fusion: lessons from flies and mice

Susan M. Abmayr et al.

DEVELOPMENT (2012)

Article Multidisciplinary Sciences

An expansive human regulatory lexicon encoded in transcription factor footprints

Shane Neph et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Daniel Ramskold et al.

NATURE BIOTECHNOLOGY (2012)

Letter Biochemical Research Methods

ChromHMM: automating chromatin-state discovery and characterization

Jason Ernst et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell et al.

NATURE PROTOCOLS (2012)

Article Biochemistry & Molecular Biology

Camera: a competitive gene set test accounting for inter-gene correlation

Di Wu et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Cell Biology

CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification

Tamar Hashimshony et al.

CELL REPORTS (2012)

Article Biochemistry & Molecular Biology

miR-31 modulates dystrophin expression: new implications for Duchenne muscular dystrophy therapy

Davide Cacchiarelli et al.

EMBO REPORTS (2011)

Article Biotechnology & Applied Microbiology

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

Peng Qiu et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

Discovering Biological Progression Underlying Microarray Samples

Peng Qiu et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Cell Biology

Muscle injury activates resident fibro/adipogenic progenitors that facilitate myogenesis

Aaron W. B. Joe et al.

NATURE CELL BIOLOGY (2010)

Article Genetics & Heredity

The multiple roles of CUX1: Insights from mouse models and cell-based assays

Laurent Sansregret et al.

Article Biochemical Research Methods

Extracting dynamics from static cancer expression data

Anupam Gupta et al.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

XBP1 controls diverse cell type- and condition-specific transcriptional regulatory networks

Diego Acosta-Alvear et al.

MOLECULAR CELL (2007)

Article Biotechnology & Applied Microbiology

GENCODE: producing a reference annotation for ENCODE

Jennifer Harrow et al.

GENOME BIOLOGY (2006)

Article Biochemical Research Methods

Comprehensive algorithm for quantitative real-time polymerase chain reaction

S Zhao et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2005)

Article Cell Biology

An initial blueprint for myogenic differentiation

A Blais et al.

GENES & DEVELOPMENT (2005)

Article Biochemical Research Methods

Reconstructing the temporal ordering of biological samples using microarray data

PM Magwene et al.

BIOINFORMATICS (2003)

Article Computer Science, Theory & Methods

Curve reconstruction, the traveling salesman problem, and Menger's theorem on length

J Giesen

DISCRETE & COMPUTATIONAL GEOMETRY (2000)