相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genome graphs and the evolution of genome inference
Benedict Paten et al.
GENOME RESEARCH (2017)
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
Jia-Xing Yue et al.
NATURE GENETICS (2017)
Phenotypic Diagnosis of Lineage and Differentiation During Sake Yeast Breeding
Shinsuke Ohnuki et al.
G3-GENES GENOMES GENETICS (2017)
Variation of the meiotic recombination landscape and properties over a broad evolutionary distance in yeasts
Christian Brion et al.
PLOS GENETICS (2017)
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Benjamin Istace et al.
GIGASCIENCE (2017)
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
Carlos Alonso-Blanco et al.
CELL (2016)
Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
Brigida Gallone et al.
CELL (2016)
Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts
Margarida Goncalves et al.
CURRENT BIOLOGY (2016)
Independent Origins of Yeast Associated with Coffee and Cacao Fermentation
Catherine L. Ludlow et al.
CURRENT BIOLOGY (2016)
Analysis of protein-coding genetic variation in 60,706 humans
Monkol Lek et al.
NATURE (2016)
Population genomics of yeasts: towards a comprehensive view across a broad evolutionary scale
Jackson Peter et al.
YEAST (2016)
The Hidden Complexity of Mendelian Traits across Natural Yeast Populations
Jing Hou et al.
CELL REPORTS (2016)
Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation
Yuan O. Zhu et al.
G3-GENES GENOMES GENETICS (2016)
Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion
Raphaelle Laureau et al.
PLOS GENETICS (2016)
Genomics and the making of yeast biodiversity
Chris Todd Hittinger et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)
Genomic Insights into the Saccharomyces sensu stricto Complex
Anthony R. Borneman et al.
GENETICS (2015)
The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
Pooja K. Strope et al.
GENOME RESEARCH (2015)
The Genome Sequence of Saccharomyces eubayanus and the Domestication of Lager-Brewing Yeasts
EmilyClare Baker et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
A population genomics insight into the Mediterranean origins of wine yeast domestication
Pedro Almeida et al.
MOLECULAR ECOLOGY (2015)
A global reference for human genetic variation
David M. Altshuler et al.
NATURE (2015)
The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects
Anna B. Sunshine et al.
PLOS BIOLOGY (2015)
Dosage compensation can buffer copy-number variation in wild yeast
James Hose et al.
ELIFE (2015)
Genomic Insights into the Saccharomyces sensu stricto Complex
Anthony R. Borneman et al.
GENETICS (2015)
Second-generation PLINK: rising to the challenge of larger and richer datasets
Christopher C. Chang et al.
GIGASCIENCE (2015)
Population Genomics Reveals Chromosome-Scale Heterogeneous Evolution in a Protoploid Yeast
Anne Friedrich et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
ASTRAL: genome-scale coalescent-based species tree estimation
S. Mirarab et al.
BIOINFORMATICS (2014)
HIGH QUALITY DE NOVO SEQUENCING AND ASSEMBLY OF THE SACCHAROMYCES ARBORICOLUS GENOME
Gianni Liti et al.
INVESTIGATIONS IN YEAST FUNCTIONAL GENOMICS AND MOLECULAR BIOLOGY (2014)
A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes
Anders Bergstroem et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images
Omar Wagih et al.
G3-GENES GENOMES GENETICS (2014)
The molecular basis of phenotypic variation in yeast
Justin C. Fay
CURRENT OPINION IN GENETICS & DEVELOPMENT (2013)
Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
Daniel A. Skelly et al.
GENOME RESEARCH (2013)
Aneuploidy underlies a multicellular phenotypic switch
Zhihao Tan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Ancient Evolutionary Trade-Offs between Yeast Ploidy States
Eniko Zorgo et al.
PLOS GENETICS (2013)
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
Gianni Liti et al.
BMC GENOMICS (2013)
A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach
Estelle Proux-Wera et al.
BMC BIOINFORMATICS (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
Barbara Dunn et al.
GENOME RESEARCH (2012)
Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity
Qi-Ming Wang et al.
MOLECULAR ECOLOGY (2012)
The mystery of missing heritability: Genetic interactions create phantom heritability
Or Zuk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Chromosomal duplication is a transient evolutionary solution to stress
Avihu H. Yona et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
Carson Holt et al.
BMC BIOINFORMATICS (2011)
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
Marcus Lechner et al.
BMC BIOINFORMATICS (2011)
Yeast: An Experimental Organism for 21st Century Biology
David Botstein et al.
GENETICS (2011)
FaST linear mixed models for genome-wide association studies
Christoph Lippert et al.
NATURE METHODS (2011)
RATT: Rapid Annotation Transfer Tool
Thomas D. Otto et al.
NUCLEIC ACIDS RESEARCH (2011)
Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution in Saccharomyces cerevisiae
Paul M. Magwene et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus
Devin R. Scannell et al.
G3-GENES GENOMES GENETICS (2011)
Rapid Expansion and Functional Divergence of Subtelomeric Gene Families in Yeasts
Chris A. Brown et al.
CURRENT BIOLOGY (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Origins and functional impact of copy number variation in the human genome
Donald F. Conrad et al.
NATURE (2010)
Remarkably ancient balanced polymorphisms in a multi-locus gene network
Chris Todd Hittinger et al.
NATURE (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
Fast model-based estimation of ancestry in unrelated individuals
David H. Alexander et al.
GENOME RESEARCH (2009)
Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
Joseph Schacherer et al.
NATURE (2009)
Finding the missing heritability of complex diseases
Teri A. Manolio et al.
NATURE (2009)
Population genomics of domestic and wild yeasts
Gianni Liti et al.
NATURE (2009)
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
Prateek Kumar et al.
NATURE PROTOCOLS (2009)
Break-induced replication - What is it and what is it for?
Bertrand Llorente et al.
CELL CYCLE (2008)
Population genomics of the wild yeast Saccharomyces paradoxus:: Quantifying the life cycle
Isheng J. Tsai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Effects of aneuploidy on cellular physiology and cell division in haploid yeast
Eduardo M. Torres et al.
SCIENCE (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Genome-wide DNA polymorphism analyses using VariScan
Stephan Hutter et al.
BMC BIOINFORMATICS (2006)
Genomic convergence toward diploidy in Saccharomyces cerevisiae
Aleeza C. Gerstein et al.
PLOS GENETICS (2006)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
Population genomic analysis of outcrossing and recombination in yeast
Douglas M. Ruderfer et al.
NATURE GENETICS (2006)
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome
H Tettelin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)