期刊
NATURE
卷 475, 期 7355, 页码 189-U94出版社
NATURE PUBLISHING GROUP
DOI: 10.1038/nature10158
关键词
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资金
- EU [APOPHYS EU-QLRT-2001-01849]
- US Department of Agriculture National Institute of Food and Agriculture [2008-55300-04757, 2009-85606-05673]
- 863'' National High Tech Research Development Program in China [2006AA100107]
- 973'' National Key Basic Research Program in China [2006CB101904, 2007CB815703, 2007CB815705, 2009CB119000]
- Board of Wageningen University and Research Centre
- CAPES Brazilian Ministry of Education
- Chinese Academy of Agricultural Sciences
- Chinese Ministry of Agriculture
- Chinese Ministry of Finance [1251610601001]
- Chinese Ministry of Science and Technology [2007DFB30080]
- China Postdoctoral Science Foundation [20070420446]
- CONICET (Argentina)
- DAFF Research Stimulus Fund [07-567]
- CONICYT-Chile [PBCT-PSD-03]
- Danish Council for Strategic Research Programme Commission on Health, Food and Welfare [2101-07-0116]
- Danish Council for Strategic Research Programme Commission on Strategic Growth Technologies [2106-07-0021]
- FINCyT [099-FINCyT-EQUIP-2009, 076-FINCyT-PIN-2008]
- Prestamo BID [1663/OC-PE]
- Fund for Economic Structural Support (FES)
- HarvestPlus Challenge Program
- Indian Council of Agricultural Research
- INIA-Ministry of Agriculture of Chile
- Instituto Nacional de Innovacion Agraria-Ministry of Agriculture of Peru
- Instituto Nacional de Tecnologia Agropecuaria (INTA)
- Italian Ministry of Research (Special Fund for Basic Research)
- International Potato Center
- LBMG of Center for Genome Regulation and Center for Mathematical Modeling
- Universidad de Chile [UMI 2807 CNRS]
- Ministry of Education and Science of Russia [02.552.11.7073]
- National Nature Science Foundation of China [30671319, 30725008, 30890032, 30971995]
- Natural Science Foundation of Shandong Province in China [Y2006D21]
- Netherlands Technology Foundation (STW)
- Netherlands Genomics Initiative (NGI)
- Netherlands Ministries of Economic Affairs (EZ) and Agriculture (LNV)
- New Zealand Institute for Crop & Food Research Ltd Strategic Science Initiative
- Perez Guerrero Fund
- Peruvian Ministry of Agriculture-Technical Secretariat of coordination
- CGIAR
- Peruvian National Council of Science and Technology (CONCYTEC)
- Polish Ministry of Science and Higher Education [47/PGS/2006/01]
- Programa Cooperativo para el Desarrollo Tecnologico Agroalimentario y Agroindustrial del Cono Sur (PROCISUR)
- Project Programa Bicentenario de Ciencia y Tecnologia - Conicyt
- PBCT - Conicyt [PSD-03]
- Russian Foundation for Basic Research [09-04-12275]
- Secretaria de Ciencia y Tecnologia (SECyT) actual Ministerio de Ciencia y Tecnologia (MINCyT), Argentina
- Shenzhen Municipal Government of China [CXB200903110066A, ZYC200903240077A, ZYC200903240076A]
- Solexa project [272-07-0196]
- Inter-American Council for Integral Development (FEMCIDI)
- Teagasc
- Teagasc Walsh Fellowship Scheme
- New Zealand Institute for Plant & Food Research Ltd
- Scottish Government Rural and Environment Research and Analysis Directorate (RERAD)
- Department for Environment, Food and Rural Affairs (DEFRA
- Agriculture and Horticulture Development Board - Potato Council
- UK Biotechnology and Biological Sciences Research Council [BB/F012640]
- US National Science Foundation [DBI-0604907/DBI-0834044]
- Virginia Agricultural Experiment Station USDA [135853]
- Wellcome Trust [WT 083481]
- Biotechnology and Biological Sciences Research Council [BB/F012640/1, BB/F013280/1] Funding Source: researchfish
- BBSRC [BB/F013280/1, BB/F012640/1] Funding Source: UKRI
Potato (Solanum tuberosum L.) is the world's most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop.
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