相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Gut Microbiota of an Invasive Subcortical Beetle,Agrilus planipennisFairmaire, Across Various Life Stages
Archana Vasanthakumar et al.
ENVIRONMENTAL ENTOMOLOGY (2015)
The Pattern of Change in the Abundances of Specific Bacterioplankton Groups Is Consistent across Different Nutrient-Enriched Habitats in Crete
Stilianos Fodelianakis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Maternal and paternal contributions to pathogen resistance dependent on development stage in a whitefish (Salmonidae)
Emily S. Clark et al.
FUNCTIONAL ECOLOGY (2014)
Microbiome investigation in the ecological speciation context of lake whitefish (Coregonus clupeaformis) using next-generation sequencing
M. Sevellec et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2014)
Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata)
Jackie Lighten et al.
MOLECULAR ECOLOGY RESOURCES (2014)
The role of biotic interactions in shaping distributions and realised assemblages of species: implications for species distribution modelling
Mary Susanne Wisz et al.
BIOLOGICAL REVIEWS (2013)
Diversity of the skin microbiota of fishes: evidence for host species specificity
Andrea Larsen et al.
FEMS MICROBIOLOGY ECOLOGY (2013)
Dissimilatory sulphate reduction in hypersaline coastal pans: an integrated microbiological and geochemical study
A. N. Roychoudhury et al.
GEOBIOLOGY (2013)
Asticcacaulis solisilvae sp nov., isolated from forest soil
Seil Kim et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)
Biphasic assembly of the murine intestinal microbiota during early development
Ida Gisela Pantoja-Feliciano et al.
ISME JOURNAL (2013)
Nonparallelism in MHCII diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next-generation sequencing
Scott A. Pavey et al.
MOLECULAR ECOLOGY (2013)
MHC class I expression dependent on bacterial infection and parental factors in whitefish embryos (Salmonidae)
Emily S. Clark et al.
MOLECULAR ECOLOGY (2013)
Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences
Swee Hoe Ong et al.
PLOS ONE (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia
Robert M. Brucker et al.
SCIENCE (2013)
Mom Knows Best: The Universality of Maternal Microbial Transmission
Lisa J. Funkhouser et al.
PLOS BIOLOGY (2013)
Fungi, bacteria and soil pH: the oxalate-carbonate pathway as a model for metabolic interaction
Gaetan Martin et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Genetic difference but functional similarity among fish gut bacterial communities through molecular and biochemical fingerprints
Maud A. Mouchet et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Additive, non-additive and maternal effects of cytokine transcription in response to immunostimulation with Vibrio vaccine in Chinook salmon (Oncorhynchus tshawytscha)
Tutku Aykanat et al.
IMMUNOGENETICS (2012)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald et al.
ISME JOURNAL (2012)
Lake microbial communities are resilient after a whole-ecosystem disturbance
Ashley Shade et al.
ISME JOURNAL (2012)
Metabolic specialization and the assembly of microbial communities
David R. Johnson et al.
ISME JOURNAL (2012)
Ultrastructure of the Denitrifying Methanotroph Candidatus Methylomirabilis oxyfera, a Novel Polygon-Shaped Bacterium
Ming L. Wu et al.
JOURNAL OF BACTERIOLOGY (2012)
Parallelism in the oxygen transport system of the lake whitefish: the role of physiological divergence in ecological speciation
Melissa L. Evans et al.
MOLECULAR ECOLOGY (2012)
A fast, highly sensitive double-nested PCR-based method to screen fish immunobiomes
Sebastien Boutin et al.
MOLECULAR ECOLOGY RESOURCES (2012)
Framing the Salmonidae Family Phylogenetic Portrait: A More Complete Picture from Increased Taxon Sampling
Alexis Crete-Lafreniere et al.
PLOS ONE (2012)
Ecological Populations of Bacteria Act as Socially Cohesive Units of Antibiotic Production and Resistance
Otto X. Cordero et al.
SCIENCE (2012)
Host-Gut Microbiota Metabolic Interactions
Jeremy K. Nicholson et al.
SCIENCE (2012)
Distance-based multivariate analyses confound location and dispersion effects
David I. Warton et al.
METHODS IN ECOLOGY AND EVOLUTION (2012)
A New Zebrafish Model of Oro-Intestinal Pathogen Colonization Reveals a Key Role for Adhesion in Protection by Probiotic Bacteria
Olaya Rendueles et al.
PLOS PATHOGENS (2012)
Stabilization of the murine gut microbiome following weaning
Patrick D. Schloss et al.
GUT MICROBES (2012)
Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification
David Berry et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Sulfuritalea hydrogenivorans gen. nov., sp nov., a facultative autotroph isolated from a freshwater lake
Hisaya Kojima et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)
UniFrac: an effective distance metric for microbial community comparison
Catherine Lozupone et al.
ISME JOURNAL (2011)
Detection of Deefgea chitinilytica in freshwater ornamental fish
A. Jung et al.
LETTERS IN APPLIED MICROBIOLOGY (2011)
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
Patrick D. Schloss et al.
PLOS ONE (2011)
Vaginal microbiome of reproductive-age women
Jacques Ravel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Bacterial community assembly based on functional genes rather than species
Catherine Burke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Broad Habitat Range of the Phylogenetically Narrow R-BT065 Cluster, Representing a Core Group of the Betaproteobacterial Genus Limnohabitans
Karel Simek et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
PyNAST: a flexible tool for aligning sequences to a template alignment
J. Gregory Caporaso et al.
BIOINFORMATICS (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
MHC-mediated local adaptation in reciprocally translocated Chinook salmon
Melissa L. Evans et al.
CONSERVATION GENETICS (2010)
Elevated resource availability sufficient to turn opportunistic into virulent fish pathogens
C. Wedekind et al.
ECOLOGY (2010)
Molecular approaches to study the insect gut symbiotic microbiota at the 'omics' age
Weibing Shi et al.
INSECT SCIENCE (2010)
Polynucleobacter cosmopolitanus sp nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers
Martin W. Hahn et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis
Anne Salonen et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2010)
Effects of different mating scenarios on embryo viability in brown trout
Alain Jacob et al.
MOLECULAR ECOLOGY (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A 'Multi-Omic' Study of Seasonal and Diel Temporal Variation
Jack A. Gilbert et al.
PLOS ONE (2010)
Forensic identification using skin bacterial communities
Noah Fierer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
Anna Git et al.
RNA (2010)
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
Christian L. Lauber et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Comparative metagenomics of Daphnia symbionts
Weihong Qi et al.
BMC GENOMICS (2009)
Fishery-induced selection on an Alpine whitefish: quantifying genetic and environmental effects on individual growth rate
Sebastien Nussle et al.
EVOLUTIONARY APPLICATIONS (2009)
Tolerance of whitefish embryos to Pseudomonas fluorescens linked to genetic and maternal effects, and reduced by previous exposure
Beat A. von Siebenthal et al.
FISH & SHELLFISH IMMUNOLOGY (2009)
Major histocompatibility complex heterozygote advantage and widespread bacterial infections in populations of Chinook salmon (Oncorhynchus tshawytscha)
Melissa L. Evans et al.
MOLECULAR ECOLOGY (2009)
Bacterial Community Variation in Human Body Habitats Across Space and Time
Elizabeth K. Costello et al.
SCIENCE (2009)
Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples
Pilar Junier et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
Micah Hamady et al.
NATURE METHODS (2008)
FastBLAST: Homology Relationships for Millions of Proteins
Morgan N. Price et al.
PLOS ONE (2008)
Evolution of mammals and their gut microbes
Ruth E. Ley et al.
SCIENCE (2008)
Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
Susan M. Huse et al.
PLOS GENETICS (2008)
Low temperature decreases the phylogenetic diversity of ammonia-oxidizing archaea and bacteria in aquarium biofiltration systems
Hidetoshi Urakawa et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Global patterns in bacterial diversity
Catherine A. Lozupone et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The role of microorganisms in coral health, disease and evolution
Eugene Rosenberg et al.
NATURE REVIEWS MICROBIOLOGY (2007)
The physiology and toxicology of salmonid eggs and larvae in relation to water quality criteria
Roderick Nigel Finn
AQUATIC TOXICOLOGY (2007)
Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters
Frederic Coulon et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Carnobacterium: positive and negative effects in the environment and in foods
Jorgen J. Leisner et al.
FEMS MICROBIOLOGY REVIEWS (2007)
MHC class IIB alleles contribute to both additive and nonadditive genetic effects on survival in Chinook salmon
Trevor E. Pitcher et al.
MOLECULAR ECOLOGY (2006)
16S rDNA-based analysis of dominant bacterial populations associated with early life stages of coho salmon (Oncorhynchus kisutch)
Jaime Romero et al.
MICROBIAL ECOLOGY (2006)
Maternal transfer of complement components C3-1, C3-3, C3-4, C4, C5, C7, Bf, and Df to offspring in rainbow trout (Oncorhynchus mykiss)
M Lvoll et al.
IMMUNOGENETICS (2006)
Distance-based tests for homogeneity of multivariate dispersions
MJ Anderson
BIOMETRICS (2006)
Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances
Jianping Xu
MOLECULAR ECOLOGY (2006)
Consequences of climatic change for water temperature and brown trout populations in Alpine rivers and streams
RE Hari et al.
GLOBAL CHANGE BIOLOGY (2006)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Surface disinfection of cod Gadus morhua and haddock Melanogrammus aeglefinus eggs with bronopol
JW Treasurer et al.
AQUACULTURE (2005)
Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes)
M Schauer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
The hierarchical system of the 'Alphaproteobacteria':: description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov and Erythrobacteraceae fam. nov.
KB Lee et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)
Enterobacteria-mediated nitrogen fixation in natural populations of the fruit fly Ceratitis capitata
A Behar et al.
MOLECULAR ECOLOGY (2005)
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot
PD Schloss et al.
GENOME BIOLOGY (2005)
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
JR Cole et al.
NUCLEIC ACIDS RESEARCH (2005)
A predator unmasked:: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective
S Rendulic et al.
SCIENCE (2004)
Phylogenetic relationships among marine Alteromonas-like proteobacteria:: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Montellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov and Psychromonadaceae fam. nov.
EP Ivanova et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Fish habitat requirements as the basis for rehabilitation of eutrophic lakes by oxygenation
R Müller et al.
FISHERIES MANAGEMENT AND ECOLOGY (2004)
Maternal transfer of humoral specific and non-specific immune parameters to sea bream (Sparus aurata) larvae
A Hanif et al.
FISH & SHELLFISH IMMUNOLOGY (2004)
MHC-linked susceptibility to a bacterial infection, but no MHC-linked cryptic female choice in whitefish
C Wedekind et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2004)
Laboratory cultivation of widespread and previously uncultured soil bacteria
SJ Joseph et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Gemmatimonas aurantiaca gen. nov., sp nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov.
H Zhang et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)
Changes in freshwater bacterial community composition during measurements of microbial and community respiration
JP Gattuso et al.
JOURNAL OF PLANKTON RESEARCH (2002)
Induced hatching to avoid infectious egg disease in whitefish
C Wedekind
CURRENT BIOLOGY (2002)
Counting the uncountable: Statistical approaches to estimating microbial diversity (vol 67, pg 4399, 2001)
JB Hughes et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Innate host defense mechanisms of fish against viruses and bacteria
AE Ellis
DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2001)
Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology
R Amann et al.
FEMS MICROBIOLOGY REVIEWS (2000)
Host-pathogen interactions: Basic concepts of microbial commensalism, colonization, infection, and disease
A Casadevall et al.
INFECTION AND IMMUNITY (2000)
分享论文
