期刊
MOLECULAR SYSTEMS BIOLOGY
卷 5, 期 -, 页码 -出版社
WILEY
DOI: 10.1038/msb.2009.50
关键词
Bahadur expansion; epistatic interaction; fitness landscape; in vitro translation system; protein synthesis
资金
- Ministry of Education, Culture, Sports, Science, and Technology, Japan
In principle, the accumulation of knowledge regarding the molecular basis of biological systems should allow the development of large-scale kinetic models of their functions. However, the development of such models requires vast numbers of parameters, which are difficult to obtain in practice. Here, we used an in vitro translation system, consisting of 69 defined components, to quantify the epistatic interactions among changes in component concentrations through Bahadur expansion, thereby obtaining a coarse-grained model of protein synthesis activity. Analyses of the data measured using various combinations of component concentrations indicated that the contributions of larger than 2-body inter-component epistatic interactions are negligible, despite the presence of larger than 2-body physical interactions. These findings allowed the prediction of protein synthesis activity at various combinations of component concentrations from a small number of samples, the principle of which is applicable to analysis and optimization of other biological systems. Moreover, the average ratio of 2- to 1-body terms was estimated to be as small as 0.1, implying high adaptability and evolvability of the protein translation system. Molecular Systems Biology 5: 297; published online 18 August 2009; doi: 10.1038/msb.2009.50
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据