相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive
Daniel Hering et al.
WATER RESEARCH (2018)
Predicting the Ecological Quality Status of Marine Environments from eDNA Metabarcoding Data Using Supervised Machine Learning
Tristan Cordier et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2017)
Suitability of PCR primers for characterizing invertebrate communities from soil and leaf litter targeting metazoan 18S ribosomal or cytochrorne oxidase I (COI) genes
Dean J. Horton et al.
EUROPEAN JOURNAL OF SOIL BIOLOGY (2017)
Freshwater biomonitoring in the Information Age
Francois Keck et al.
FRONTIERS IN ECOLOGY AND THE ENVIRONMENT (2017)
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
Kristy Deiner et al.
MOLECULAR ECOLOGY (2017)
Environmental DNA enables detection of terrestrial mammals from forest pond water
Masayuki Ushio et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring
Laure Apotheloz-Perret-Gentil et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema
Machiko Yamada et al.
PHYCOLOGICAL RESEARCH (2017)
DNA metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single-taxon bacterial bloom
Christian Wurzbacher et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2017)
Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity
Iliana Bista et al.
NATURE COMMUNICATIONS (2017)
Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding
Vasco Elbrecht et al.
ECOLOGY AND EVOLUTION (2017)
Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities
Olivier Laroche et al.
PEERJ (2017)
Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island, France)
Valentin Vasselon et al.
ECOLOGICAL INDICATORS (2017)
Assessing strengths and weaknesses of DNA metabarcoding-based macroinvertebrate identification for routine stream monitoring
Vasco Elbrecht et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
The ecology of environmental DNA and implications for conservation genetics
Matthew A. Barnes et al.
CONSERVATION GENETICS (2016)
Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates
Eddy J. Dowle et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Detection of a global aquatic invasive amphibian, Xenopus laevis, using environmental DNA
Jean Secondi et al.
AMPHIBIA-REPTILIA (2016)
Scale and scope matter when explaining varying patterns of community diversity in riverine metacommunities
Mathew Seymour et al.
BASIC AND APPLIED ECOLOGY (2016)
Distribution and population genetic variation of cryptic species of the Alpine mayfly Baetis alpinus (Ephemeroptera: Baetidae) in the Central Alps
Marie Leys et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Widely distributed and regionally isolated! Drivers of genetic structure in Gammarus fossarum in a human-impacted landscape
Martina Weiss et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Metabarcoding reveals strong spatial structure and temporal turnover of zooplankton communities among marine and freshwater ports
Frederic J. J. Chain et al.
DIVERSITY AND DISTRIBUTIONS (2016)
Multiple-stressor effects on stream invertebrates: DNA barcoding reveals contrasting responses of cryptic mayfly species
Jan N. Macher et al.
ECOLOGICAL INDICATORS (2016)
Protist metabarcoding and environmental biomonitoring: Time for change
J. Pawlowski et al.
EUROPEAN JOURNAL OF PROTISTOLOGY (2016)
Detecting signatures of competition from observational data: a combined approach using DNA barcoding, diversity partitioning and checkerboards at small spatial scales
Trevor T. Bringloe et al.
FRESHWATER BIOLOGY (2016)
Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
Bernd Hanfling et al.
MOLECULAR ECOLOGY (2016)
Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
Alice Valentini et al.
MOLECULAR ECOLOGY (2016)
Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA
Lucie Zinger et al.
SOIL BIOLOGY & BIOCHEMISTRY (2016)
Environmental DNA reveals that rivers are conveyer belts of biodiversity information
Kristy Deiner et al.
NATURE COMMUNICATIONS (2016)
Environmental context and magnitude of disturbance influence trait-mediated community responses to wastewater in streams
Francis J. Burdon et al.
ECOLOGY AND EVOLUTION (2016)
Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
Vasco Elbrecht et al.
PEERJ (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
www.freshwaterecology.info - An online tool that unifies, standardises and codifies more than 20,000 European freshwater organisms and their ecological preferences
Astrid Schmidt-Kloiber et al.
ECOLOGICAL INDICATORS (2015)
Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies
Ida Baerholm Schnell et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Planetary boundaries: Guiding human development on a changing planet
Will Steffen et al.
SCIENCE (2015)
Managing aquatic ecosystems and water resources under multiple stress - An introduction to the MARS project
Daniel Hering et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2015)
Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies
Jonas Zimmermann et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass-Sequence Relationships with an Innovative Metabarcoding Protocol
Vasco Elbrecht et al.
PLOS ONE (2015)
Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing
Joel F. Gibson et al.
PLoS One (2015)
DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
Bruce E. Deagle et al.
BIOLOGY LETTERS (2014)
Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications
John K. Jackson et al.
FRESHWATER SCIENCE (2014)
Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
Yinqiu Ji et al.
ECOLOGY LETTERS (2013)
Patterns of benthic algae and cyanobacteria along twin-stressor gradients of nutrients and fine sediment: a stream mesocosm experiment
Annika Wagenhoff et al.
FRESHWATER BIOLOGY (2013)
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
Matthieu Leray et al.
FRONTIERS IN ZOOLOGY (2013)
Effects of connectivity, dispersal directionality and functional traits on the metacommunity structure of river benthic diatoms
Jing Liu et al.
JOURNAL OF BIOGEOGRAPHY (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
Macroinvertebrate responses along broad stressor gradients of deposited fine sediment and dissolved nutrients: a stream mesocosm experiment
Annika Wagenhoff et al.
JOURNAL OF APPLIED ECOLOGY (2012)
Towards next-generation biodiversity assessment using DNA metabarcoding
Pierre Taberlet et al.
MOLECULAR ECOLOGY (2012)
THE IMPACT OF FINE SEDIMENT ON MACRO-INVERTEBRATES
J. I. Jones et al.
RIVER RESEARCH AND APPLICATIONS (2012)
Sequencing our way towards understanding global eukaryotic biodiversity
Holly M. Bik et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
Jan Pawlowski et al.
PLOS BIOLOGY (2012)
Subsidy-stress and multiple-stressor effects along gradients of deposited fine sediment and dissolved nutrients in a regional set of streams and rivers
Annika Wagenhoff et al.
FRESHWATER BIOLOGY (2011)
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
Gregg P. Robideau et al.
MOLECULAR ECOLOGY RESOURCES (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Multiple stressors in agricultural streams: interactions among sediment addition, nutrient enrichment and water abstraction
Christoph D. Matthaei et al.
JOURNAL OF APPLIED ECOLOGY (2010)
Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
S. Creer et al.
MOLECULAR ECOLOGY (2010)
Global threats to human water security and river biodiversity
C. J. Voeroesmarty et al.
NATURE (2010)
Barcoding Amoebae: Comparison of SSU, ITS and COI Genes as Tools for Molecular Identification of Naked Lobose Amoebae
Elena Nassonova et al.
PROTIST (2010)
Do insects lose flight before they lose their wings? Population genetic structure in subalpine stoneflies
Graham A. McCulloch et al.
MOLECULAR ECOLOGY (2009)
Barcoding Bamboozled by Bacteria: Convergence to Metazoan Mitochondrial Primer Targets by Marine Microbes
Mark E. Siddall et al.
SYSTEMATIC BIOLOGY (2009)
Individual and combined responses of stream ecosystems to multiple stressors
Colin R. Townsend et al.
JOURNAL OF APPLIED ECOLOGY (2008)
Effect size, confidence interval and statistical significance: a practical guide for biologists
Shinichi Nakagawa et al.
BIOLOGICAL REVIEWS (2007)
BOLD: The Barcode of Life Data System (www.barcodinglife.org)
Sujeevan Ratnasingham et al.
MOLECULAR ECOLOGY NOTES (2007)
MEGAN analysis of metagenomic data
Daniel H. Huson et al.
GENOME RESEARCH (2007)
Efficacy of a multi-metric fish index as an analysis tool for the transitional fish component of the Water Framework Directive
Steve Coates et al.
MARINE POLLUTION BULLETIN (2007)
Linkages between land management activities and water quality in an intensively farmed catchment in southern New Zealand
R. M. Monaghan et al.
AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2007)
Impacts of fine sediment addition to tussock, pasture, dairy and deer farming streams in New Zealand
Christoph D. Matthaei et al.
FRESHWATER BIOLOGY (2006)
Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences
M Markmann et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2005)
Functional biodiversity of macroinvertebrate assemblages along major ecological gradients of boreal headwater streams
J Heino
FRESHWATER BIOLOGY (2005)
Evidence of a threshold level of fine sediment accumulation for altering benthic macroinvertebrate communities
MD Kaller et al.
HYDROBIOLOGIA (2004)
Colonization and use of pine wood versus native wood in New Zealand plantation forest streams: implications for riparian management
KJ Collier et al.
AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS (2004)
Macrophytes and phytobenthos as indicators of ecological status in German lakes - a contribution to the implementation of the Water Framework Directive
J Schaumburg et al.
LIMNOLOGICA (2004)
Biological identifications through DNA barcodes
PDN Hebert et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)
Using diatoms to assess the biological condition of large rivers in Idaho (USA)
LS Fore et al.
FRESHWATER BIOLOGY (2002)
Effects of cattle treading and natural amelioration on soil physical properties and pasture under dairy farming in Southland, New Zealand
JJ Drewry et al.
NEW ZEALAND JOURNAL OF AGRICULTURAL RESEARCH (2000)
分享论文
