相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。A COMPARISON OF STATISTICAL METHODS FOR DETECTING DIFFERENTIALLY EXPRESSED GENES FROM RNA-SEQ DATA
Vanessa M. Kvam et al.
AMERICAN JOURNAL OF BOTANY (2012)
Comparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies
Robert Ekblom et al.
COMPARATIVE AND FUNCTIONAL GENOMICS (2012)
Comparative RNA sequencing reveals substantial genetic variation in endangered primates
George H. Perry et al.
GENOME RESEARCH (2012)
GAGE: A critical evaluation of genome assemblies and assembly algorithms
Steven L. Salzberg et al.
GENOME RESEARCH (2012)
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
Ying Wang et al.
BMC BIOINFORMATICS (2011)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
The sex-biased brain: sexual dimorphism in gene expression in two species of songbirds
Sara Naurin et al.
BMC GENOMICS (2011)
General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq
Jochen B. W. Wolf et al.
BMC GENOMICS (2011)
Computational methods for Gene Orthology inference
David M. Kristensen et al.
BRIEFINGS IN BIOINFORMATICS (2011)
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
Gerton Lunter et al.
GENOME RESEARCH (2011)
Applications of next generation sequencing in molecular ecology of non-model organisms
R. Ekblom et al.
HEREDITY (2011)
Sequencing technologies and genome sequencing
Chandra Shekhar Pareek et al.
JOURNAL OF APPLIED GENETICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster
Xinxian Deng et al.
NATURE GENETICS (2011)
RNA sequencing: advances, challenges and opportunities
Fatih Ozsolak et al.
NATURE REVIEWS GENETICS (2011)
A Bioinformatics Approach for Determining Sample Identity from Different Lanes of High-Throughput Sequencing Data
Rachel L. Goldfeder et al.
PLOS ONE (2011)
Modernizing Reference Genome Assemblies
Deanna M. Church et al.
PLOS BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Genome-wide synteny through highly sensitive sequence alignment: Satsuma
Manfred G. Grabherr et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Thomas J. Hardcastle et al.
BMC BIOINFORMATICS (2010)
Genome-wide analysis of alternative splicing evolution among Mus subspecies
Bettina Harr et al.
MOLECULAR ECOLOGY (2010)
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species
Axel Kunstner et al.
MOLECULAR ECOLOGY (2010)
A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush)
Frederick Goetz et al.
MOLECULAR ECOLOGY (2010)
Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow
Jochen B. W. Wolf et al.
MOLECULAR ECOLOGY (2010)
Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes
K. R. Elmer et al.
MOLECULAR ECOLOGY (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Estimating accuracy of RNA-Seq and microarrays with proteomics
Xing Fu et al.
BMC GENOMICS (2009)
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species
David Haussler et al.
JOURNAL OF HEREDITY (2009)
Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling
Nicola Palmieri et al.
PLOS ONE (2009)
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
John C. Marioni et al.
GENOME RESEARCH (2008)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
Webb Miller et al.
GENOME RESEARCH (2007)
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes
Feng Chen et al.
PLOS ONE (2007)
Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results
Carmiya Bar-Or et al.
BMC GENOMICS (2006)
Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms
Lin Xu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
ROCR: visualizing classifier performance in R
T Sing et al.
BIOINFORMATICS (2005)
DNA assembly with gaps (Dawg): simulating sequence evolution
RA Cartwright
BIOINFORMATICS (2005)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)