相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Analysis of omics data with genome-scale models of metabolism
Daniel R. Hyduke et al.
MOLECULAR BIOSYSTEMS (2013)
The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression
Vinoy K. Ramachandran et al.
BMC GENOMICS (2012)
Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation
Aarash Bordbar et al.
MOLECULAR SYSTEMS BIOLOGY (2012)
KEGG for integration and interpretation of large-scale molecular data sets
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2012)
Metabolic profiling of meat: assessment of pork hygiene and contamination with Salmonella typhimurium
Yun Xu et al.
ANALYST (2011)
Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
Jan Schellenberger et al.
BIOPHYSICAL JOURNAL (2011)
Host response transcriptional profiling reveals extracellular components and ABC (ATP-binding cassette) transporters gene enrichment in typhoid fever-infected Nigerian children
Sok Kean Khoo et al.
BMC INFECTIOUS DISEASES (2011)
Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella
Hyunjin Yoon et al.
BMC SYSTEMS BIOLOGY (2011)
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2
Ines Thiele et al.
BMC SYSTEMS BIOLOGY (2011)
Subversion of innate and adaptive immune activation induced by structurally modified lipopolysaccharide from Salmonella typhimurium
Rodolfo Pastelin-Palacios et al.
IMMUNOLOGY (2011)
Discovery of Novel Secreted Virulence Factors from Salmonella enterica Serovar Typhimurium by Proteomic Analysis of Culture Supernatants
George S. Niemann et al.
INFECTION AND IMMUNITY (2011)
Impact of Salmonella Infection on Host Hormone Metabolism Revealed by Metabolomics
L. Caetano M. Antunes et al.
INFECTION AND IMMUNITY (2011)
Metabolomics Reveals Phospholipids as Important Nutrient Sources during Salmonella Growth in Bile In Vitro and In Vivo
L. Caetano M. Antunes et al.
JOURNAL OF BACTERIOLOGY (2011)
Quantitative Mass Spectrometry Catalogues Salmonella Pathogenicity Island-2 Effectors and Identifies Their Cognate Host Binding Partners
Sigrid D. Auweter et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
GC-MS Based Metabolomics for Rapid Simultaneous Detection of Escherichia coli O157:H7, Salmonella Typhimurium, Salmonella Muenchen, and Salmonella Hartford in Ground Beef and Chicken
Juan Manuel Cevallos-Cevallos et al.
JOURNAL OF FOOD SCIENCE (2011)
Quantitative Proteomic Analysis of Salmonella enterica Serovar Typhimurium under PhoP/PhoQ Activation Conditions
Jian-Lan Yu et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Oral putrescine restores virulence of ornithine decarboxylase-deficient Leishmania donovani in mice
Tamara Olenyik et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2011)
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
Jan Schellenberger et al.
NATURE PROTOCOLS (2011)
Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives
Maud M. Koek et al.
METABOLOMICS (2011)
Biological and virulence characteristics of the YqhC mutant of Salmonella
Nicholas M. Eakley et al.
MICROBIOLOGY AND IMMUNOLOGY (2011)
Rapid and Highly Efficient Method for Scarless Mutagenesis within the Salmonella enterica Chromosome
Kathrin Blank et al.
PLOS ONE (2011)
Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps
Christian Perez-Llamas et al.
PLOS ONE (2011)
Exposure of Salmonella enterica Serovar Typhimurium to High Level Biocide Challenge Can Select Multidrug Resistant Mutants in a Single Step
Rebekah N. Whitehead et al.
PLOS ONE (2011)
Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics
Young-Mo Kim et al.
RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2011)
Quantitative proteomic identification of host factors involved in the Salmonella typhimurium infection cycle
Mijke W. Vogels et al.
PROTEOMICS (2011)
Characterisation of proteins extracted from the surface of Salmonella Typhimurium grown under SPI-2-inducing conditions by LC-ESI/MS/MS sequencing
Aileen E. Sherry et al.
PROTEOMICS (2011)
Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis
Laurence Rohmer et al.
TRENDS IN MICROBIOLOGY (2011)
A Systems Biology Approach to Infectious Disease Research: Innovating the Pathogen-Host Research Paradigm
Alan Aderem et al.
MBIO (2011)
Technologies and approaches to elucidate and model the virulence program of Salmonella
Jason E. McDermott et al.
FRONTIERS IN MICROBIOLOGY (2011)
VOC-based metabolic profiling for food spoilage detection with the application to detecting Salmonella typhimurium-contaminated pork
Yun Xu et al.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2010)
Comparative proteomic analysis of Salmonella enterica serovar Typhimurium ppGpp-deficient mutant to identify a novel virulence protein required for intracellular survival in macrophages
Takeshi Haneda et al.
BMC MICROBIOLOGY (2010)
Metabolic Network Analysis of Pseudomonas aeruginosa during Chronic Cystic Fibrosis Lung Infection
Matthew A. Oberhardt et al.
JOURNAL OF BACTERIOLOGY (2010)
Fast Detection of Volatile Organic Compounds from Bacterial Cultures by Secondary Electrospray Ionization-Mass Spectrometry
Jiangjiang Zhu et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2010)
What is flux balance analysis?
Jeffrey D. Orth et al.
NATURE BIOTECHNOLOGY (2010)
Carbon metabolism of intracellular bacterial pathogens and possible links to virulence
Wolfgang Eisenreich et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Glucose and glucose 6-phosphate as carbon sources in extra- and intracellular growth of enteroinvasive Escherichia coli and Salmonella enterica
Andreas Goetz et al.
MICROBIOLOGY-SGM (2010)
Carbon Metabolism of Enterobacterial Human Pathogens Growing in Epithelial Colorectal Adenocarcinoma (Caco-2) Cells
Andreas Goetz et al.
PLOS ONE (2010)
A Global Metabolic Shift Is Linked to Salmonella Multicellular Development
Aaron P. White et al.
PLOS ONE (2010)
MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis
Karsten Hiller et al.
ANALYTICAL CHEMISTRY (2009)
FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry
Tobias Kind et al.
ANALYTICAL CHEMISTRY (2009)
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
Anu Raghunathan et al.
BMC SYSTEMS BIOLOGY (2009)
System-level analysis of Salmonella metabolism during infection
Dirk Bumann
CURRENT OPINION IN MICROBIOLOGY (2009)
Contribution of Gene Amplification to Evolution of Increased Antibiotic Resistance in Salmonella typhimurium
Song Sun et al.
GENETICS (2009)
Genome Expression Analyses Revealing the Modulation of the Salmonella Rcs Regulon by the Attenuator IgaA
Javier F. Mariscotti et al.
JOURNAL OF BACTERIOLOGY (2009)
Genome Scale Reconstruction of a Salmonella Metabolic Model COMPARISON OF SIMILARITY AND DIFFERENCES WITH A COMMENSAL ESCHERICHIA COLI STRAIN
Manal AbuOun et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Reconstruction of biochemical networks in microorganisms
Adam M. Feist et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium
Hyunjin Yoon et al.
PLOS PATHOGENS (2009)
DAnTE: a statistical tool for quantitative analysis of -omics data
Ashoka D. Polpitiya et al.
BIOINFORMATICS (2008)
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
Ana Paula Oliveira et al.
BMC SYSTEMS BIOLOGY (2008)
Microbial contamination of fruit and vegetables and the behaviour of enteropathogens in the phyllosphere: a review
J. C. Heaton et al.
JOURNAL OF APPLIED MICROBIOLOGY (2008)
Quality control for plant metabolomics: reporting MSI-compliant studies
Oliver Fiehn et al.
PLANT JOURNAL (2008)
Context-specific metabolic networks are consistent with experiments
Scott A. Becker et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
A comparison of background correction methods for two-colour microarrays
Matthew E. Ritchie et al.
BIOINFORMATICS (2007)
Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics
Nathan P. Manes et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Statistical strategies for avoiding false discoveries in metabolomics and related experiments
David I. Broadhurst et al.
METABOLOMICS (2006)
Proteomic analysis of Salmonella enterica serovar Typhimurium isolated from RAW 264.7 macrophages -: Identification of a novel protein that contributes to the replication of serovar Typhimurium inside macrophages
Liang Shi et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions
Joshua N. Adkins et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
Salmonella transcriptomics:: relating regulons, stimulons and regulatory networks to the process of infection
A Thompson et al.
CURRENT OPINION IN MICROBIOLOGY (2006)
Insights into host responses against pathogens from transcriptional profiling
RG Jenner et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Iron and infection: the heart of the matter
JJ Bullen et al.
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY (2005)
Uncovering transcriptional regulation of metabolism by using metabolic network topology
KR Patil et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Components of the peptidoglycan-recycling pathway modulate invasion and intracellular survival of Salmonella enterica serovar Typhimurium
A Folkesson et al.
CELLULAR MICROBIOLOGY (2005)
FoodNet estimate of the burden of illness caused by nontyphoidal Salmonella infections in the United States
AC Voetsch et al.
CLINICAL INFECTIOUS DISEASES (2004)
Expression and secretion of Salmonella pathogenicity island-2 virulence genes in response to acidification exhibit differential requirements of a functional type III secretion apparatus and SsaL
BK Coombes et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
R Mahadevan et al.
METABOLIC ENGINEERING (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Extreme pathways and Kirchhoff's second law
ND Price et al.
BIOPHYSICAL JOURNAL (2002)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)