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Christina Kahramanoglou et al.
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Wenqin Wang et al.
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Douglas F. Browning et al.
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Chromosomal periodicity and positional networks of genes in Escherichia coli
Anthony Mathelier et al.
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Spatial organization of the flow of genetic information in bacteria
Paula Montero Llopis et al.
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Shane C. Dillon et al.
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Constitutive heterochromatin: a surprising variety of expressed sequences
Patrizio Dimitri et al.
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Protein Occupancy Landscape of a Bacterial Genome
Tiffany Vora et al.
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Rosa C. Banos et al.
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Carsten Marr et al.
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Romain Mercier et al.
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Martin J. Lercher et al.
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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
Socorro Gama-Castro et al.
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High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes
Benjamin Lang et al.
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Probing transcription factor dynamics at the single-molecule level in a living cell
Johan Elf et al.
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Remus T. Dame et al.
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The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: A molecular perspective
Martijn S. Luijsterburg et al.
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Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome
David C. Grainger et al.
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Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase
Taku Oshima et al.
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Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome
Nicolas Blot et al.
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Transcriptional regulation by the numbers: models
L Bintu et al.
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DNA bridging: a property shared among H-NS-like proteins
RT Dame et al.
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Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome
M Hashimoto et al.
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Topological domain structure of the Escherichia coli chromosome
L Postow et al.
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Macrodomain organization of the Escherichia coli chromosome
M Valens et al.
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Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
Y Liu et al.
GENOME BIOLOGY (2004)
Genome-scale analysis of the uses of the Escherichia coli genome:: Model-driven analysis of heterogeneous data sets
TE Allen et al.
JOURNAL OF BACTERIOLOGY (2003)
HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes
S Garcia-Vallve et al.
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The degree of oligomerization of the H-NS nucleoid structuring protein is related to specific binding to DNA
C Badaut et al.
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Protein-DNA computation by stochastic assembly cascade
R Bar-Ziv et al.
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JA Eisen
CURRENT OPINION IN GENETICS & DEVELOPMENT (2000)
EcoGene: a genome sequence database for Escherichia coli K-12
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