4.1 Article

Gene silencing and large-scale domain structure of the E. coli genome

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

NuST: analysis of the interplay between nucleoid organization and gene expression

Vittore F. Scolari et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Gene location and DNA density determine transcription factor distributions in Escherichia coli

Thomas E. Kuhlman et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Article Multidisciplinary Sciences

Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

Patrick Sobetzko et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Membrane protein expression triggers chromosomal locus repositioning in bacteria

Elizabeth A. Libby et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Physics, Multidisciplinary

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

Vincenzo G. Benza et al.

REPORTS ON PROGRESS IN PHYSICS (2012)

Article Mathematical & Computational Biology

DnaA and the timing of chromosome replication in Es-cherichia coli as a function of growth rate

Matthew A. A. Grant et al.

BMC SYSTEMS BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Gene clusters reflecting macrodomain structure respond to nucleoid perturbations

Vittore F. Scolari et al.

MOLECULAR BIOSYSTEMS (2011)

Article Biochemistry & Molecular Biology

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

Christina Kahramanoglou et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria

Wenqin Wang et al.

SCIENCE (2011)

Review Microbiology

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

Douglas F. Browning et al.

CURRENT OPINION IN MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

Chromosomal periodicity and positional networks of genes in Escherichia coli

Anthony Mathelier et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

Article Multidisciplinary Sciences

Spatial organization of the flow of genetic information in bacteria

Paula Montero Llopis et al.

NATURE (2010)

Review Microbiology

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

Shane C. Dillon et al.

NATURE REVIEWS MICROBIOLOGY (2010)

Review Biochemistry & Molecular Biology

Constitutive heterochromatin: a surprising variety of expressed sequences

Patrizio Dimitri et al.

CHROMOSOMA (2009)

Article Biochemistry & Molecular Biology

Protein Occupancy Landscape of a Bacterial Genome

Tiffany Vora et al.

MOLECULAR CELL (2009)

Article Mathematical & Computational Biology

Dissecting the logical types of network control in gene expression profiles

Carsten Marr et al.

BMC SYSTEMS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Integration of horizontally transferred genes into regulatory interaction networks takes many million years

Martin J. Lercher et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Review Microbiology

H-NS, the genome sentinel

Charles J. Dorman

NATURE REVIEWS MICROBIOLOGY (2007)

Review Biochemistry & Molecular Biology

The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: A molecular perspective

Martijn S. Luijsterburg et al.

JOURNAL OF STRUCTURAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome

David C. Grainger et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome

Nicolas Blot et al.

EMBO REPORTS (2006)

Review Cell Biology

Transcriptional regulation by the numbers: models

L Bintu et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)

Article Microbiology

DNA bridging: a property shared among H-NS-like proteins

RT Dame et al.

JOURNAL OF BACTERIOLOGY (2005)

Article Biochemistry & Molecular Biology

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome

M Hashimoto et al.

MOLECULAR MICROBIOLOGY (2005)

Article Cell Biology

Topological domain structure of the Escherichia coli chromosome

L Postow et al.

GENES & DEVELOPMENT (2004)

Article Biochemistry & Molecular Biology

Macrodomain organization of the Escherichia coli chromosome

M Valens et al.

EMBO JOURNAL (2004)

Article Biochemistry & Molecular Biology

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

S Garcia-Vallve et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

The degree of oligomerization of the H-NS nucleoid structuring protein is related to specific binding to DNA

C Badaut et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Multidisciplinary Sciences

Protein-DNA computation by stochastic assembly cascade

R Bar-Ziv et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Cell Biology

Horizontal gene transfer among microbial genomes: new insights from complete genome analysis

JA Eisen

CURRENT OPINION IN GENETICS & DEVELOPMENT (2000)

Article Biochemistry & Molecular Biology

EcoGene: a genome sequence database for Escherichia coli K-12

KE Rudd

NUCLEIC ACIDS RESEARCH (2000)