相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
Min Li et al.
BMC BIOINFORMATICS (2012)
Expression of PTRF in PC-3 Cells Modulates Cholesterol Dynamics and the Actin Cytoskeleton Impacting Secretion Pathways
Kerry L. Inder et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry
Stephen J. Orr et al.
MOLECULAR SYSTEMS BIOLOGY (2012)
Differential network biology
Trey Ideker et al.
MOLECULAR SYSTEMS BIOLOGY (2012)
The IntAct molecular interaction database in 2012
Samuel Kerrien et al.
NUCLEIC ACIDS RESEARCH (2012)
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Ron Caspi et al.
NUCLEIC ACIDS RESEARCH (2012)
KEGG for integration and interpretation of large-scale molecular data sets
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2012)
A proteomics approach to the cell-surface interactome using the enzyme-mediated activation of radical sources reaction
Songlin Jiang et al.
PROTEOMICS (2012)
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges
Purvesh Khatri et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Cytoscape 2.8: new features for data integration and network visualization
Michael E. Smoot et al.
BIOINFORMATICS (2011)
An integrated proteomics analysis of bone tissues in response to mechanical stimulation
Jiliang Li et al.
BMC SYSTEMS BIOLOGY (2011)
Mapping the NPHP-JBTS-MKS Protein Network Reveals Ciliopathy Disease Genes and Pathways
Liyun Sang et al.
CELL (2011)
Principles and Strategies for Developing Network Models in Cancer
Dana Pe'er et al.
CELL (2011)
PTRF-cavin-1 expression decreases the migration of PC3 prostate cancer cells: Role of matrix metalloprotease 9
Cho Sanda Aung et al.
EUROPEAN JOURNAL OF CELL BIOLOGY (2011)
Lipid rafts: signaling and sorting platforms of cells and their roles in cancer
Simon Staubach et al.
EXPERT REVIEW OF PROTEOMICS (2011)
MIPS: curated databases and comprehensive secondary data resources in 2010
H. Werner Mewes et al.
NUCLEIC ACIDS RESEARCH (2011)
The BioGRID Interaction Database: 2011 update
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2011)
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2011)
Membrane Organization and Lipid Rafts
Kai Simons et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)
Comparative Analysis of Proteome and Transcriptome Variation in Mouse
Anatole Ghazalpour et al.
PLOS GENETICS (2011)
Membrane rafts in Alzheimer's disease beta-amyloid production
Kulandaivelu S. Vetrivel et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS (2010)
Computational approaches for detecting protein complexes from protein interaction networks: a survey
Xiaoli Li et al.
BMC GENOMICS (2010)
Temporal Proteomics Profiling of Lipid Rafts in CCR6-Activated T Cells Reveals the Integration of Actin Cytoskeleton Dynamics
Shu-Ling Lin et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Proteome Scale Characterization of Human S-Acylated Proteins in Lipid Raft-enriched and Non-raft Membranes
Wei Yang et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
Revitalizing membrane rafts: new tools and insights
Kai Simons et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Elodie Portales-Casamar et al.
NUCLEIC ACIDS RESEARCH (2010)
Lipid Rafts As a Membrane-Organizing Principle
Daniel Lingwood et al.
SCIENCE (2010)
Protein-Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks
Javier De Las Rivas et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Protein-protein interaction as a predictor of subcellular location
Chang Jin Shin et al.
BMC SYSTEMS BIOLOGY (2009)
SRBC/cavin-3 is a caveolin adapter protein that regulates caveolae function
Kerrie-Ann McMahon et al.
EMBO JOURNAL (2009)
Quantitative Proteomics Analysis of Macrophage Rafts Reveals Compartmentalized Activation of the Proteasome and of Proteasome-mediated ERK Activation in Response to Lipopolysaccharide
Suraj Dhungana et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Protein Profiling of Plasma Membranes Defines Aberrant Signaling Pathways in Mantle Cell Lymphoma
Robert S. Boyd et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Quantitative interaction proteomics using mass spectrometry
Alexander Wepf et al.
NATURE METHODS (2009)
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
Da Wei Huang et al.
NUCLEIC ACIDS RESEARCH (2009)
Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
Pingzhao Hu et al.
PLOS BIOLOGY (2009)
A Human Protein Interaction Network Shows Conservation of Aging Processes between Human and Invertebrate Species
Russell Bell et al.
PLOS GENETICS (2009)
Identifying functional modules in protein-protein interaction networks:: an integrated exact approach
Marcus T. Dittrich et al.
BIOINFORMATICS (2008)
PTRF-Cavin, a conserved cytoplasmic protein required for Caveola formation and function
Michelle M. Hill et al.
CELL (2008)
Deletion of Cavin/PTRF Causes Global Loss of Caveolae, Dyslipidemia, and Glucose Intolerance
Libin Liu et al.
CELL METABOLISM (2008)
High confidence determination of specific protein-protein interactions using quantitative mass spectrometry
Michiel Vermeulen et al.
CURRENT OPINION IN BIOTECHNOLOGY (2008)
Protein networks in disease
Trey Ideker et al.
GENOME RESEARCH (2008)
Differential Proteome Expression Associated with Urokinase Plasminogen Activator Receptor (uPAR) Suppression in Malignant Epithelial Cancer
Rohit G. Saldanha et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Quantitative proteomics as a new piece of the systems biology puzzle
Angela Bachi et al.
JOURNAL OF PROTEOMICS (2008)
Proteomic approaches to the analysis of multiprotein signaling complexes
Wei Yang et al.
PROTEOMICS (2008)
False positive reduction in protein-protein interaction predictions using gene ontology annotations
Mahmoud A. Mahdavi et al.
BMC BIOINFORMATICS (2007)
Global analysis of dynamic changes in lipid raft proteins during T-cell activation
Michimoto Kobayashi et al.
ELECTROPHORESIS (2007)
Network-based prediction of protein function
Roded Sharan et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Cross-talk between G protein-coupled receptor and epidermal growth factor receptor signaling pathways contributes to growth and invasion of head and neck squamous cell carcinoma
Sufi Mary Thomas et al.
CANCER RESEARCH (2006)
Quantitative proteomic analysis of B cell lipid rafts reveals that ezrin regulates antigen receptor-mediated lipid raft dynamics
Neetu Gupta et al.
NATURE IMMUNOLOGY (2006)
An evaluation of human protein-protein interaction data in the public domain
Suresh Mathivanan et al.
BMC BIOINFORMATICS (2006)
TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes
V. Matys et al.
NUCLEIC ACIDS RESEARCH (2006)
Lipid rafts: contentious only from simplistic standpoints
John F. Hancock
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
Getting rid of caveolins: Phenotypes of caveolin-deficient animals
S Le Lay et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Proteomics of organelles and large cellular structures
JR Yates et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
Lipid rafts regulate lipopolysaccharide-induced activation of Cdc42 and inflammatory functions of the human neutrophil
MB Fessler et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Mass spectrometric-based approaches in quantitative proteomics
SE Ong et al.
METHODS (2003)
Extensive temporally regulated reorganization of the lipid raft proteome following T-cell antigen receptor triggering
L Bini et al.
BIOCHEMICAL JOURNAL (2003)
Lipid rafts and caveolae as portals for endocytosis: New insights and common mechanisms
RG Parton et al.
TRAFFIC (2003)
Loss of caveolae, vascular dysfunction, and pulmonary defects in caveolin-1 gene-disrupted mice
M Drab et al.
SCIENCE (2001)
Caveolin-1 regulates transforming growth factor (TGF)-β/SMAD signaling through an interaction with the TGF-β type I receptor
B Razani et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Lipid rafts and signal transduction
K Simons et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2000)
DIP: the Database of Interacting Proteins
I Xenarios et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
