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Simon J. Watson et al.
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Koichiro Tamura et al.
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Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
Andre E. Minoche et al.
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Darren P. Martin et al.
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Nicolas Goulleret et al.
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Zhen Zhang et al.
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Heng Li et al.
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Rachel Civen et al.
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Aidan MacNamara et al.
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Joe Parker et al.
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Herpes Zoster with Skin Lesions and Meningitis Caused by 2 Different Genotypes of the Oka Varicella-Zoster Virus Vaccine
Myron J. Levin et al.
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Safety of varicella vaccine after licensure in the United States: Experience from reports to the vaccine adverse event reporting system, 1995-2005
Sandra S. Chaves et al.
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Vaccine Oka variants and sequence variability in vaccine-related skin lesions
Judith Breuer et al.
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Sueli L. Tillieux et al.
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jModelTest: Phylogenetic model averaging
David Posada
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N. Sengupta et al.
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Leveraging information across HLA alleles/supertypes improves epitope prediction
David Heckerman et al.
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S. D. Tyler et al.
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DNA sequence variability in isolates recovered from patients with postvaccination rash or herpes zoster caused by Oka varicella vaccine
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Natural selection for rash-forming genotypes of the varicella-zoster vaccine virus detected within immunized human hosts
Mark L. Quinlivan et al.
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GARD: a genetic algorithm for recombination detection
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S. P. Parker et al.
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RJ Cohrs et al.
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L Zerboni et al.
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B Rentier et al.
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Disseminated varicella infection due to the vaccine strain of varicella-zoster virus, in a patient with a novel deficiency in natural killer T cells
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Likelihood-based inference for genetic correlation coefficients
DJ Balding
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JM Lynch et al.
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K Katoh et al.
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TH Wang et al.
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