相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
The Novel Marine Gliding Zooflagellate Genus Mantamonas (Mantamonadida ord. n.: Apusozoa)
Edvard Gluecksman et al.
PROTIST (2011)
Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree
Thomas Cavalier-Smith
BIOLOGY LETTERS (2010)
ETE: a python Environment for Tree Exploration
Jaime Huerta-Cepas et al.
BMC BIOINFORMATICS (2010)
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?
Simonetta Gribaldo et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Diversity and reductive evolution of mitochondria among microbial eukaryotes
Karin Hjort et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Mosaic origin of the mitochondrial proteome
Radek Szklarczyk et al.
PROTEOMICS (2010)
Phylogeny and Evolution of Apusomonadida (Protozoa: Apusozoa): New Genera and Species
Thomas Cavalier-Smith et al.
PROTIST (2010)
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
Laura Wegener Parfrey et al.
SYSTEMATIC BIOLOGY (2010)
The origin and early evolution of eukaryotes in the light of phylogenomics
Eugene V. Koonin
GENOME BIOLOGY (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Nicolas Lartillot et al.
BIOINFORMATICS (2009)
Evolution: Revisiting the Root of the Eukaryote Tree
Andrew J. Roger et al.
CURRENT BIOLOGY (2009)
Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates
Fabien Burki et al.
GENOME BIOLOGY AND EVOLUTION (2009)
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
Dongying Wu et al.
NATURE (2009)
GOBASE: an organelle genome database
Emmet A. OBrien et al.
NUCLEIC ACIDS RESEARCH (2009)
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic supergroups
Vladimir Hampl et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Organelles in Blastocystis that blur the distinction between mitochondria and hydrogenosomes
Alexandra Stechmann et al.
CURRENT BIOLOGY (2008)
A site- and time-heterogeneous model of amino acid replacement
Samuel Blanquart et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Improvement of molecular phylogenetic inference and the phylogeny of Bilateria
Nicolas Lartillot et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
The archaebacterial origin of eukaryotes
Cymon J. Cox et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Phylogenomics Reshuffles the Eukaryotic Supergroups
Fabien Burki et al.
PLOS ONE (2007)
Toward resolving the eukaryotic tree:: The phylogenetic positions of jakobids and cercozoans
Naiara Rodriguez-Ezpeleta et al.
CURRENT BIOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with Chromalveolates
Jeremiah D. Hackett et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Reconstructing the evolution of the mitochondrial ribosomal proteome
Paulien Smits et al.
NUCLEIC ACIDS RESEARCH (2007)
The mechanisms of codon reassignments in mitochondrial genetic codes
Supratim Sengupta et al.
JOURNAL OF MOLECULAR EVOLUTION (2007)
Detecting and overcoming systematic errors in genome-scale phylogenies
Naiara Rodriguez-Ezpeleta et al.
SYSTEMATIC BIOLOGY (2007)
Evolutionary relationships of apusomonads inferred from taxon-rich analyses of 6 nuclear encoded genes
Eunsoo Kim et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Eukaryotic evolution, changes and challenges
TM Embley et al.
NATURE (2006)
Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli et al.
SCIENCE (2006)
Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of primitive eukaryotes
AGB Simpson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
H Brinkmann et al.
SYSTEMATIC BIOLOGY (2005)
Myosin domain evolution and the primary divergence of eukaryotes
TA Richards et al.
NATURE (2005)
Monophyly of primary photosynthetic eukaryotes:: Green plants, red algae, and glaucophytes
N Rodríguez-Ezpeleta et al.
CURRENT BIOLOGY (2005)
Root of the eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
N Arisue et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Isolation and characterization of the mitochondrion-like organelle from Blastocystis hominis
AMA Nasirudeen et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2004)
MitoP2, an integrated database on mitochondrial proteins in yeast and man
C Andreoli et al.
NUCLEIC ACIDS RESEARCH (2004)
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
N Lartillot et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
On the origin of mitochondria:: a genomics perspective
SGE Andersson et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)
Mitochondria and hydrogenosomes are two forms of the same fundamental organelle
TM Embley et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)
Rooting the eukaryote tree by using a derived gene fusion
A Stechmann et al.
SCIENCE (2002)
The potential value of indels as phylogenetic markers: Position of trichomonads as a case study
E Bapteste et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
An approximately unbiased test of phylogenetic tree selection
H Shimodaira
SYSTEMATIC BIOLOGY (2002)
The analysis of 100 genes supports the grouping of three highly divergent amoebae:: Dictyostelium, Entamoeba, and Mastigamoeba
E Bapteste et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
CONSEL: for assessing the confidence of phylogenetic tree selection
H Shimodaira et al.
BIOINFORMATICS (2001)
Rewiring the keyboard evolvability of the genetic code
RD Knight et al.
NATURE REVIEWS GENETICS (2001)
The new phylogeny of eukaryotes
H Philippe et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2000)
Origin and evolution of the mitochondrial proteome
CG Kurland et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
Nucleotide bias causes a genomewide bias in the amino acid composition of proteins
GAC Singer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)
Phylogeny of eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution
H Philippe et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)