4.8 Article

Complex Principal Component and Correlation Structure of 16 Yeast Genomic Variables

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biology

Systemic factors dominate mammal protein evolution

Alexander E. Vinogradov

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)

Article Multidisciplinary Sciences

The Genetic Landscape of a Cell

Michael Costanzo et al.

SCIENCE (2010)

Article Biochemistry & Molecular Biology

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

Albert J. Vilella et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

An integrated view of the correlations between genomic and phenomic variables

Dong Yang et al.

JOURNAL OF GENETICS AND GENOMICS (2009)

Article Biochemistry & Molecular Biology

PEDANT covers all complete RefSeq genomes

Mathias C. Walter et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks

Nitish Mittal et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Genetics & Heredity

Weak functional constraints on phosphoproteomes

Christian R. Landry et al.

TRENDS IN GENETICS (2009)

Article Biochemical Research Methods

Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate

Yu Xia et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

The role of disorder in interaction networks: a structural analysis

Philip M. Kim et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Structural disorder serves as a weak signal for intracellular protein degradation

P. Tompa et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

The BioGRID interaction database: 2008 update

Bobby-Joe Breitkreutz et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Combining models of protein translation and population genetics to predict protein production rates from codon usage patterns

Michael A. Gilchrist

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

IntAct - open source resource for molecular interaction data

S. Kerrien et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Multidisciplinary Sciences

Relating three-dimensional structures to protein networks provides evolutionary insights

Philip M. Kim et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

Preferential duplication in the sparse part of yeast protein interaction network

Li Li et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Multidisciplinary Sciences

Quantification of protein half-lives in the budding yeast proteome

Archana Belle et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Evolutionary Biology

Evolutionary constraints on yeast protein size

Jonas Warringer et al.

BMC EVOLUTIONARY BIOLOGY (2006)

Article Genetics & Heredity

The quest for the universals of protein evolution

Eduardo P. C. Rocha

TRENDS IN GENETICS (2006)

Article Biochemical Research Methods

Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes

Chad Haynes et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Biochemical Research Methods

Evolutionary and physiological importance of hub proteins

Nizar N. Batada et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Biology

Unifying measures of gene function and evolution

Yuri I. Wolf et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)

Article Multidisciplinary Sciences

Single-cell proteomic analysis of S-cerevisiae reveals the architecture of biological noise

John R. S. Newman et al.

NATURE (2006)

Review Genetics & Heredity

An integrated view of protein evolution

C Pál et al.

NATURE REVIEWS GENETICS (2006)

Article Biochemical Research Methods

Protein protein interactions, evolutionary rate, abundance and age

R Saeed et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

A single determinant dominates the rate of yeast protein evolution

DA Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Biochemistry & Molecular Biology

MPact: the MIPS protein interaction resource on yeast

Ulrich Gueldener et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Genetics & Heredity

Why do hubs tend to be essential in protein networks?

Xionglei He et al.

PLOS GENETICS (2006)

Article Multidisciplinary Sciences

Why highly expressed proteins evolve slowly

DA Drummond et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biology

Gene essentiality and the topology of protein interaction networks

S Coulomb et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2005)

Article Biochemistry & Molecular Biology

Gene complexity and gene duplicability

XL He et al.

CURRENT BIOLOGY (2005)

Article Multidisciplinary Sciences

Functional genomic analysis of the rates of protein evolution

DP Wall et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

CYGD: the comprehensive Yeast Genome Database

U Guldener et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

The importance of intrinsic disorder for protein phosphorylation

LM Iakoucheva et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

The DISOPRED server for the prediction of protein disorder

JJ Ward et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

An analysis of determinants of amino acids substitution rates in bacterial proteins

EPC Rocha et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

A Ruepp et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

The Database of Interacting Proteins: 2004 update

L Salwinski et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Solving the riddle of codon usage preferences: a test for translational selection

M dos Reis et al.

NUCLEIC ACIDS RESEARCH (2004)

Review Biotechnology & Applied Microbiology

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

EV Koonin et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Real-time PCR-based method for the estimation of genome sizes

J Wilhelm et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

BIND: the Biomolecular Interaction Network Database

GD Bader et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Evolutionary rate heterogeneity in proteins with long disordered regions

CJ Brown et al.

JOURNAL OF MOLECULAR EVOLUTION (2002)

Article Multidisciplinary Sciences

Evolutionary rate in the protein interaction network

HB Fraser et al.

SCIENCE (2002)

Article Cell Biology

Gene expression and molecular evolution

H Akashi

CURRENT OPINION IN GENETICS & DEVELOPMENT (2001)

Article Multidisciplinary Sciences

Lethality and centrality in protein networks

H Jeong et al.

NATURE (2001)

Article Statistics & Probability

Sign and rank covariance matrices

S Visuri et al.

JOURNAL OF STATISTICAL PLANNING AND INFERENCE (2000)