相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。INDELible: A Flexible Simulator of Biological Sequence Evolution
William Fletcher et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Kazutaka Katoh et al.
BMC BIOINFORMATICS (2008)
The role of positive selection in determining the molecular cause of species differences in disease
Jessica J. Vamathevan et al.
BMC EVOLUTIONARY BIOLOGY (2008)
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
Romain A. Studer et al.
GENOME RESEARCH (2008)
How well does the HoT score reflect sequence alignment accuracy?
Barry G. Hall
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Alignment uncertainty and genomic analysis
Karen M. Wong et al.
SCIENCE (2008)
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
Ari Loytynoja et al.
SCIENCE (2008)
Adaptive evolution of genes underlying schizophrenia
Bernard Crespi et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2007)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
An empirical codon model for protein sequence evolution
Carolin Kosiol et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Heads or tails: A simple reliability check for multiple sequence alignments
Giddy Landan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
Maria Anisimova et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees
Simon Whelan et al.
NUCLEIC ACIDS RESEARCH (2006)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
An algorithm for progressive multiple alignment of sequences with insertions
A Löytynoja et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Bayes empirical Bayes inference of amino acid sites under positive selection
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes
MS Taylor et al.
GENOME RESEARCH (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Modeling the site-specific variation of selection patterns along lineages
S Guindon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Indel-based evolutionary distance and mouse-human divergence
AY Ogurtsov et al.
GENOME RESEARCH (2004)
Frequent false detection of positive selection by the likelihood method with branch-site models
JZ Zhang
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
