4.7 Article

Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Protter: interactive protein feature visualization and integration with experimental proteomic data

Ulrich Omasits et al.

BIOINFORMATICS (2014)

Letter Biotechnology & Applied Microbiology

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

Hannes L. Roest et al.

NATURE BIOTECHNOLOGY (2014)

Article Chemistry, Analytical

Solid Phase Extraction of N-Linked Glycopeptides Using Hydrazide Tip

Jing Chen et al.

ANALYTICAL CHEMISTRY (2013)

Article Medical Laboratory Technology

The role of proteomics in prostate cancer research: Biomarker discovery and validation

Elisa Pin et al.

CLINICAL BIOCHEMISTRY (2013)

Review Pathology

Mass spectrometric protein maps for biomarker discovery and clinical research

Yansheng Liu et al.

EXPERT REVIEW OF MOLECULAR DIAGNOSTICS (2013)

Article Biochemical Research Methods

An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics

Hendrik Weisser et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Review Biochemistry & Molecular Biology

High-throughput sequencing for biology and medicine

Wendy Weijia Soon et al.

MOLECULAR SYSTEMS BIOLOGY (2013)

Article Biochemical Research Methods

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

Ben C. Collins et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

Juan Antonio Vizcaino et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Endocrinology & Metabolism

Metabolomic signatures of aggressive prostate cancer

Jonathan E. McDunn et al.

PROSTATE (2013)

Article Biochemical Research Methods

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS

Yansheng Liu et al.

PROTEOMICS (2013)

Article Biochemical Research Methods

PanelComposer: A Web-Based Panel Construction Tool for Multivariate Analysis of Disease Biomarker Candidates

Seul-Ki Jeong et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Oncology

PTK7 as a novel marker for favorable gastric cancer patient survival

Yi Lin et al.

JOURNAL OF SURGICAL ONCOLOGY (2012)

Article Biochemical Research Methods

Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry

Christina Ludwig et al.

MOLECULAR & CELLULAR PROTEOMICS (2012)

Article Biochemistry & Molecular Biology

Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma

Jacek R. Wisniewski et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Article Multidisciplinary Sciences

The mutational landscape of lethal castration-resistant prostate cancer

Catherine S. Grasso et al.

NATURE (2012)

Article Genetics & Heredity

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer

Christopher E. Barbieri et al.

NATURE GENETICS (2012)

Article Biochemical Research Methods

Using iRT, a normalized retention time for more targeted measurement of peptides

Claudia Escher et al.

PROTEOMICS (2012)

Review Cell Biology

Beyond PSA: The Next Generation of Prostate Cancer Biomarkers

John R. Prensner et al.

SCIENCE TRANSLATIONAL MEDICINE (2012)

Article Biochemical Research Methods

Secretome Compartment Is a Valuable Source of Biomarkers for Cancer-Relevant Pathways

Dario Caccia et al.

JOURNAL OF PROTEOME RESEARCH (2011)

Article Biochemical Research Methods

A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas

Terry Farrah et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Multidisciplinary Sciences

The genomic complexity of primary human prostate cancer

Michael F. Berger et al.

NATURE (2011)

Article Biochemical Research Methods

mProphet: automated data processing and statistical validation for large-scale SRM experiments

Lukas Reiter et al.

NATURE METHODS (2011)

Letter Biochemical Research Methods

SignalP 4.0: discriminating signal peptides from transmembrane regions

Thomas Nordahl Petersen et al.

NATURE METHODS (2011)

Article Multidisciplinary Sciences

Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers

Akash Kumar et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing

Kalpana Kannan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer

Igor Cima et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

Reactome pathway analysis to enrich biological discovery in proteomics data sets

Robin Haw et al.

PROTEOMICS (2011)

Article Biochemical Research Methods

Lung Cancer Serum Biomarker Discovery Using Glycoprotein Capture and Liquid Chromatography Mass Spectrometry

Xuemei Zeng et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biotechnology & Applied Microbiology

Options and considerations when selecting a quantitative proteomics strategy

Bruno Domon et al.

NATURE BIOTECHNOLOGY (2010)

Letter Biotechnology & Applied Microbiology

Towards a knowledge-based Human Protein Atlas

Mathias Uhlen et al.

NATURE BIOTECHNOLOGY (2010)

Article Biotechnology & Applied Microbiology

A human functional protein interaction network and its application to cancer data analysis

Guanming Wu et al.

GENOME BIOLOGY (2010)

Review Oncology

Targeted proteomic strategy for clinical biomarker discovery

Ralph Schiess et al.

MOLECULAR ONCOLOGY (2009)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Article Medicine, General & Internal

Mortality Results from a Randomized Prostate-Cancer Screening Trial

Gerald L. Andriole et al.

NEW ENGLAND JOURNAL OF MEDICINE (2009)

Article Biochemistry & Molecular Biology

Pomelo II: finding differentially expressed genes

Edward R. Morrissey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Soluble PTK7 inhibits tube formation, migration, and invasion of endothelial cells and angiogenesis

Won-Sik Shin et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)

Article Biochemical Research Methods

ProteoWizard: open source software for rapid proteomics tools development

Darren Kessner et al.

BIOINFORMATICS (2008)

Review Oncology

Integrins in prostate cancer progression

Hira Lal Goel et al.

ENDOCRINE-RELATED CANCER (2008)

Editorial Material Biochemistry & Molecular Biology

Expression and Secretion of N-acylethanolamine-hydrolysing Acid Amidase in Human Prostate Cancer Cells

Jun Wang et al.

JOURNAL OF BIOCHEMISTRY (2008)

Article Biochemical Research Methods

Cell-specific aptamer probes for membrane protein elucidation in cancer cells

Dihua Shangguan et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Mass spectrometric detection of tissue proteins in plasma

Hui Zhang et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

Solid-phase extraction of N-linked glycopeptides

Yuan Tian et al.

NATURE PROTOCOLS (2007)

Article Cell Biology

Role of autophagy in cancer - Management of metabolic stress

Shengkan Jin et al.

AUTOPHAGY (2007)

Article Oncology

The US food and drug administration perspective on cancer biomarker development

Steven Gutman et al.

NATURE REVIEWS CANCER (2006)

Article Biotechnology & Applied Microbiology

UniPep - a database for human N-linked glycosites: a resource for biomarker discovery

Hui Zhang et al.

GENOME BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Involvement of N-acylethanolamine-hydrolyzing acid amidase in the degradation of anandamide and other N-acylethanolamines in macrophages

YX Sun et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS (2005)

Article Biochemistry & Molecular Biology

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

Andrew Keller et al.

MOLECULAR SYSTEMS BIOLOGY (2005)

Review Biochemistry & Molecular Biology

Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes

H Zhang et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2004)

Article Multidisciplinary Sciences

Gene expression profiling identifies clinically relevant subtypes of prostate cancer

J Lapointe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Review Genetics & Heredity

Microarray data normalization and transformation

J Quackenbush

NATURE GENETICS (2002)

Article Biochemical Research Methods

The SPOT synthesis technique - Synthetic peptide arrays on membrane supports - principles and applications

R Frank

JOURNAL OF IMMUNOLOGICAL METHODS (2002)

Article Biochemistry & Molecular Biology

Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes

A Krogh et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)