相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Protein TAILS: when termini tell tales of proteolysis and function
Philipp F. Lange et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2013)
Identifying Natural Substrates for Dipeptidyl Peptidases 8 and 9 Using Terminal Amine Isotopic Labeling of Substrates (TAILS) Reveals in Vivo Roles in Cellular Homeostasis and Energy Metabolism
Claire H. Wilson et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Cell Death Proteomics Database: Consolidating Proteomics Data on Cell Death
Magnus O. Arntzen et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Deletion of Cysteine Cathepsins B or L Yields Differential Impacts on Murine Skin Proteome and Degradome
Stefan Tholen et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
The DegraBase: A Database of Proteolysis in Healthy and Apoptotic Human Cells
Emily D. Crawford et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Deep Proteome Coverage Based on Ribosome Profiling Aids Mass Spectrometry-based Protein and Peptide Discovery and Provides Evidence of Alternative Translation Products and Near-cognate Translation Initiation Events
Gerben Menschaert et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events
Niklaas Colaert et al.
NUCLEIC ACIDS RESEARCH (2013)
Systems-Level Analysis of Proteolytic Events in Increased Vascular Permeability and Complement Activation in Skin Inflammation
Ulrich Auf Dem Keller et al.
SCIENCE SIGNALING (2013)
CLIPPER: an add-on to the Trans-Proteomic Pipeline for the automated analysis of TAILS N-terminomics data
Ulrich Auf Dem Keller et al.
BIOLOGICAL CHEMISTRY (2012)
N-terminal acetylation and other functions of Nα-acetyltransferases
Jolien Hollebeke et al.
BIOLOGICAL CHEMISTRY (2012)
Secretome protein enrichment identifies physiological BACE1 protease substrates in neurons
Peer-Hendrik Kuhn et al.
EMBO JOURNAL (2012)
Unbiased Selective Isolation of Protein N-terminal Peptides from Complex Proteome Samples Using Phospho Tagging (PTAG) and TiO2-based Depletion
Geert P. M. Mommen et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors
Neil D. Rawlings et al.
NUCLEIC ACIDS RESEARCH (2012)
Quantitative profiling of caspase-cleaved substrates reveals different drug-induced and cell-type patterns in apoptosis
Kazutaka Shimbo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Global kinetic analysis of proteolysis via quantitative targeted proteomics
Nicholas J. Agard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Qualitative improvement and quantitative assessment of N-terminomics
Vilem Guryca et al.
PROTEOMICS (2012)
Selective isolation of N-blocked peptide by combining AspN digestion, transamination, and tosylhydrazine glass treatment
Kazuhiro Sonomura et al.
ANALYTICAL BIOCHEMISTRY (2011)
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
Nicholas T. Ingolia et al.
CELL (2011)
Improved Peptide Identification by Targeted Fragmentation Using CID, HCD and ETD on an LTQ-Orbitrap Velos
Christian K. Frese et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Deubiquitylase, DeSUMOylase, and DeISGylase Activity Microarrays for Assay of Substrate Preference and Functional Modifiers
Christian M. Loch et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Broad Coverage Identification of Multiple Proteolytic Cleavage Site Sequences in Complex High Molecular Weight Proteins Using Quantitative Proteomics as a Complement to Edman Sequencing
Alain Doucet et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
TopFIND, a knowledgebase linking protein termini with function
Philipp F. Lange et al.
NATURE METHODS (2011)
Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging
Craig D. Wenger et al.
NATURE METHODS (2011)
MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
Lily Ting et al.
NATURE METHODS (2011)
Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
Oded Kleifeld et al.
NATURE PROTOCOLS (2011)
Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry
Oliver Schilling et al.
NATURE PROTOCOLS (2011)
A proteome-scale study on in vivo protein N-alpha-acetylation using an optimized method
Xumin Zhang et al.
PROTEOMICS (2011)
NatF Contributes to an Evolutionary Shift in Protein N-Terminal Acetylation and Is Important for Normal Chromosome Segregation
Petra Van Damme et al.
PLOS GENETICS (2011)
Inflammatory Stimuli Regulate Caspase Substrate Profiles
Nicholas J. Agard et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
A Statistics-based Platform for Quantitative N-terminome Analysis and Identification of Protease Cleavage Products
Ulrich Auf Dem Keller et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
Multiplex N-terminome Analysis of MMP-2 and MMP-9 Substrate Degradomes by iTRAQ-TAILS Quantitative Proteomics
Anna Prudova et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
Oded Kleifeld et al.
NATURE BIOTECHNOLOGY (2010)
Complementary positional proteomics for screening substrates of endo- and exoproteases
Petra Van Damme et al.
NATURE METHODS (2010)
Proteome-wide analysis of protein carboxy termini: C terminomics
Oliver Schilling et al.
NATURE METHODS (2010)
Sampling the N-terminal proteome of human blood
David Wildes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A proteomics approach to study in vivo protein N-alpha-modifications
Xumin Zhang et al.
JOURNAL OF PROTEOMICS (2009)
PMAP: databases for analyzing proteolytic events and pathways
Yoshinobu Igarashi et al.
NUCLEIC ACIDS RESEARCH (2009)
Global profiling of protease cleavage sites by chemoselective labeling of protein N-termini
Guoqiang Xu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
A rapid isolation and identification method for blocked N-terminal peptides by isothiocyanate-coupled magnetic nanoparticles and MS
Liyan Zhao et al.
PROTEOMICS (2009)
Tags for labeling protein N-termini with subtiligase for proteomics
Hikari A. I. Yoshihara et al.
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2008)
Global Sequencing of proteolytic cleavage sites in apoptosis by specific Labeling of protein N termini
Sami Mahrus et al.
CELL (2008)
Global mapping of the topography and magnitude of proteolytic events in apoptosis
Melissa M. Dix et al.
CELL (2008)
Structure and Mechanism of Metallocarboxypeptidases
F. Gomis-Rüth
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2008)
Matrix metalloproteinase processing of CXCL11/I-TAC results in loss of chemoattractant activity and altered glycosaminoglycan binding
Jennifer H. Cox et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Pharmacoproteomics of a metalloproteinase hydroxamate inhibitor in breast cancer cells: Dynamics of membrane type 1 matrix metalloproteinase-mediated membrane protein shedding
Georgina S. Butler et al.
MOLECULAR AND CELLULAR BIOLOGY (2008)
Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
Oliver Schilling et al.
NATURE BIOTECHNOLOGY (2008)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)
An Staes et al.
PROTEOMICS (2008)
Dimethyl isotope-coded affinity selection for the analysis of free and blocked N-termini of proteins using LC-MS/MS
Po-Tsun Shen et al.
ANALYTICAL CHEMISTRY (2007)
Identification of candidate angiogenic inhibitors processed by matrix metalloproteinase 2 (MMP-2) in cell-based proteomic screens:: Disruption of vascular endothelial growth factor (VEGF)/heparin affin regulatory peptide (pleiotrophin) and VEGF/connective tissue growth factor angiogenic inhibitory complexes by MMP-2 proteolysis
Richard A. Dean et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Selective isolation of N-blocked peptides by isocyanate-coupled resin
Toshiyuki Mikami et al.
ANALYTICAL CHEMISTRY (2007)
N-terminal α-methylation of RCC1 is necessary for stable chromatin association and normal mitosis
Ting Chen et al.
NATURE CELL BIOLOGY (2007)
Proteornics discovery of metalloproteinase substrates in the cellular context by iTRAQTM labeling reveals a diverse MMP-2 substrate degradome
Richard A. Dean et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
CutDB: a proteolytic event database
Yoshinobu Igarashi et al.
NUCLEIC ACIDS RESEARCH (2007)
The CASBAH: a searchable database of caspase substrates
A. U. Luthi et al.
CELL DEATH AND DIFFERENTIATION (2007)
Protein processing and other modifications analyzed by diagonal peptide chromatography
Kris Gevaert et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2006)
Protease specificity determination by using cellular libraries of peptide substrates (CLiPS)
Kevin T. Boulware et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization
Lucy McDonald et al.
NATURE PROTOCOLS (2006)
Targeting proteases: successes, failures and future prospects
Boris Turk
NATURE REVIEWS DRUG DISCOVERY (2006)
Positional proteomics: selective recovery and analysis of N-terminal proteolytic peptides
L McDonald et al.
NATURE METHODS (2005)
Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis
P Van Damme et al.
NATURE METHODS (2005)
A strategy to profile prime and non-prime proteolytic substrate specificity
HM Petrassi et al.
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2005)
Profiling serine protease substrate specificity with solution phase fluorogenic peptide microarrays
DN Gosalia et al.
PROTEOMICS (2005)
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
Andrew Keller et al.
MOLECULAR SYSTEMS BIOLOGY (2005)
A proteomic approach to identify substrates of matrix metalloproteinase-14 in human plasma
IK Hwang et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2004)
A proteomic approach for the discovery of protease substrates
AJ Bredemeyer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
PL Ross et al.
MOLECULAR & CELLULAR PROTEOMICS (2004)
TANDEM: matching proteins with tandem mass spectra
R Craig et al.
BIOINFORMATICS (2004)
Identification of caspase-3 degradome by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization-time of flight analysis
AY Lee et al.
PROTEOMICS (2004)
PNA-encoded protease substrate microarrays
N Winssinger et al.
CHEMISTRY & BIOLOGY (2004)
Membrane protease proteomics: Isotope-coded affinity tag MS identification of undescribed MT1-matrix metalloproteinase substrates
EM Tam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Stable-isotope dimethyl labeling for quantitative proteomics
JL Hsu et al.
ANALYTICAL CHEMISTRY (2003)
Human and mouse proteases:: A comparative genomic approach
XS Puente et al.
NATURE REVIEWS GENETICS (2003)
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
K Gevaert et al.
NATURE BIOTECHNOLOGY (2003)
Tandem mass tags:: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
A Thompson et al.
ANALYTICAL CHEMISTRY (2003)
Peptide microarrays for the determination of protease substrate specificity
CM Salisbury et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2002)
Protease degradomics:: A new challenge for proteomics
C López-Otin et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2002)
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
SE Ong et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)
A proteomic approach for the identification of cell-surface proteins shed by metalloproteases
L Guo et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)
Carboxypeptidases from A to Z: implications in embryonic development and Wnt binding
SE Reznik et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2001)
Determination of protease cleavage site motifs using mixture-based oriented peptide libraries
BE Turk et al.
NATURE BIOTECHNOLOGY (2001)
Nα-terminal acetylation of eukaryotic proteins
B Polevoda et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
A method to define the carboxyl terminal of proteins
S Sechi et al.
ANALYTICAL CHEMISTRY (2000)
Rapid identification of substrates for novel proteases using a combinatorial peptide library
G Rosse et al.
JOURNAL OF COMBINATORIAL CHEMISTRY (2000)