相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Systematic approach for validating the ubiquitinated proteome
Nicholas T. Seyfried et al.
ANALYTICAL CHEMISTRY (2008)
Quality of life and comorbidity score as prognostic determinants in non-small-cell lung cancer patients
W. Jacot et al.
ANNALS OF ONCOLOGY (2008)
Proteases for processing proneuropeptides into peptide neurotransmitters and hormones
Vivian Hook et al.
ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY (2008)
Regulation of protein turnover by acetyltransferases and deacetylases
Karin Sadoul et al.
BIOCHIMIE (2008)
Targeting ubiquitin specific proteases for drug discovery
Laurent Daviet et al.
BIOCHIMIE (2008)
Soluble cytokeratin-19 and E-selectin biomarkers: Their relevance for lung cancer detection when tested independently or in combinations
Menha Swellam et al.
CANCER BIOMARKERS (2008)
Matrix metalloproteinase-8 functions as a metastasis suppressor through modulation of tumor cell adhesion and invasion
Ana Gutierrez-Fernandez et al.
CANCER RESEARCH (2008)
Stromal cell-derived factors 1α and 1β, inflammatory protein-10 and interferon-inducible T cell chemo-attractant are novel substrates of dipeptidyl peptidase 8
Katerina Ajami et al.
FEBS LETTERS (2008)
MT-SP1 proteolysis and regulation of cell-microenvironment interactions
Molly R. Darragh et al.
FRONTIERS IN BIOSCIENCE-LANDMARK (2008)
Additional MDA-MB-231 breast cancer cell matrix metalloproteinases promote invasiveness
Luca Hegedus et al.
JOURNAL OF CELLULAR PHYSIOLOGY (2008)
Cutting edge: Soluble IL-6R is produced by IL-6R ectodomain shedding in activated CD4 T cells
Eva M. Briso et al.
JOURNAL OF IMMUNOLOGY (2008)
A novel proteolytic cascade generates an extracellular matrix-derived chemoattractant in chronic neutrophilic inflammation
Amit Gaggar et al.
JOURNAL OF IMMUNOLOGY (2008)
Pharmacoproteomics of a metalloproteinase hydroxamate inhibitor in breast cancer cells: Dynamics of membrane type 1 matrix metalloproteinase-mediated membrane protein shedding
Georgina S. Butler et al.
MOLECULAR AND CELLULAR BIOLOGY (2008)
Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
Oliver Schilling et al.
NATURE BIOTECHNOLOGY (2008)
Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)
An Staes et al.
PROTEOMICS (2008)
Quantitative proteomic analysis of protein complexes
Delphine Pflieger et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
Prognostic role of serum cytokeratin 19 fragments in advanced non-small-cell lung cancer: association of marker changes after two chemotherapy cycles with different measures of clinical response and survival
B. Nisman et al.
BRITISH JOURNAL OF CANCER (2008)
Cathepsin K inhibitors: A novel target for osteoporosis therapy
S. A. Stoch et al.
CLINICAL PHARMACOLOGY & THERAPEUTICS (2008)
Concepts in sumoylation: a decade on
Ruth Geiss-Friedlander et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Identification of candidate angiogenic inhibitors processed by matrix metalloproteinase 2 (MMP-2) in cell-based proteomic screens:: Disruption of vascular endothelial growth factor (VEGF)/heparin affin regulatory peptide (pleiotrophin) and VEGF/connective tissue growth factor angiogenic inhibitory complexes by MMP-2 proteolysis
Richard A. Dean et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3
Steven T. Runyon et al.
PROTEIN SCIENCE (2007)
Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway
Thibault Mayor et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Noninvasive optical imaging of cysteine protease activity using fluorescently quenched activity-based probes
Galia Blum et al.
NATURE CHEMICAL BIOLOGY (2007)
Profiling constitutive proteolytic events in vivo
John C. Timmer et al.
BIOCHEMICAL JOURNAL (2007)
Analysis and validation of proteomic data generated by tandem mass spectrometry
Alexey I. Nesvizhskii et al.
NATURE METHODS (2007)
Mass spectrometry-based functional proteomics: from molecular machines to protein networks
Thomas Kocher et al.
NATURE METHODS (2007)
The cooperative activity between the carboxyl-terminal TSP1 repeats and the CUB domains of ADAMTS13 is crucial for recognition of von Willebrand factor under flow
Ping Zhang et al.
BLOOD (2007)
Use of SILAC for exploring sheddase and matrix degradation of fibroblasts in culture by the PIIISUMP atrolysin A: Identification of two novel substrates with functional relevance
A. F. M. Pinto et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2007)
Analysis of protein complexes using mass spectrometry
Anne-Claude Gingras et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Proteolytic processing of CXCL11 by CD13/aminopeptidase N impairs CXCR3 and CXCR7 binding and signaling and reduces lymphocyte and endothelial cell migration
Paul Proost et al.
BLOOD (2007)
Pro-protein convertases in intermediary metabolism: islet hormones, brain/gut hormones and integrated physiology
Dominique Bataille
JOURNAL OF MOLECULAR MEDICINE-JMM (2007)
The protease domain of procollagen C-proteinase (BMP1) lacks substrate selectivity, which is conferred by non-proteolytic domains
Carsten Wermter et al.
BIOLOGICAL CHEMISTRY (2007)
Hu/Mu protin oligonucleotide microarray: Dual-species array for profiling protease and protease inhibitor gene expression in tumors and their microenvironment
Donald R. Schwartz et al.
MOLECULAR CANCER RESEARCH (2007)
The biochemical, biological, and pathological kaleidoscope of cell surface substrates processed by matrix metalloproteinases
Benedicte Cauwe et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2007)
Proteornics discovery of metalloproteinase substrates in the cellular context by iTRAQTM labeling reveals a diverse MMP-2 substrate degradome
Richard A. Dean et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Extracellular heat shock protein-90α:: linking hypoxia to skin cell motility and wound healing
Wei Li et al.
EMBO JOURNAL (2007)
Mass spectrometry analysis of the native protein complex containing actinin-4 in prostate cancer cells
Tomohiko Hara et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Identification of putative androgen receptor interaction protein modules - Cytoskeleton and endosomes modulate androgen receptor signaling in prostate cancer cells
Rohini Jasavala et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Proteomic validation of protease drug targets: Pharmacoproteomics of matrix metalloproteinase inhibitor drugs using isotope-coded affinity tag labelling and tandem mass spectrometry
G. S. Butler et al.
CURRENT PHARMACEUTICAL DESIGN (2007)
Increased expression of human macrophage metalloelastase (MMP-12) is associated with the invasion of endometrial adenocarcinoma
Xuesong Yang et al.
PATHOLOGY RESEARCH AND PRACTICE (2007)
Identification of proteolytic cleavage sites by quantitative proteomics
Mari Enoksson et al.
JOURNAL OF PROTEOME RESEARCH (2007)
Proteome-wide identification of HtrA2/Omi substrates
Lieselotte Vande Walle et al.
JOURNAL OF PROTEOME RESEARCH (2007)
In search of partners: linking extracellular proteases to substrates
Christopher M. Overall et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK)
Matthias Selbach et al.
NATURE METHODS (2006)
Functional and quantitative proteomics using SILAC
Matthias Mann
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
The proteomics of N-terminal methionine cleavage
Frederic Frottin et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells
Tilmann Buerckstuemmer et al.
NATURE METHODS (2006)
Proteomic identification of in vivo substrates for matrix metalloproteinases 2 and 9 reveals a mechanism for resolution of inflammation
Kendra J. Greenlee et al.
JOURNAL OF IMMUNOLOGY (2006)
Identification of putative in vivo substrates of calpain 3 by comparative proteomics of overexpressing transgenic and nontransgenic mice
Niaz Cohen et al.
PROTEOMICS (2006)
Post-translational modifications in the context of therapeutic proteins
Gary Walsh et al.
NATURE BIOTECHNOLOGY (2006)
Ions of the interactome: The role of MS in the study of protein interactions in proteomics and structural biology
Kevin M. Downard
PROTEOMICS (2006)
Caspase-containing complexes in the regulation of cell death and inflammation
Nele Festjens et al.
BIOLOGICAL CHEMISTRY (2006)
Proteomic identification of desmoglein 2 and activated leukocyte cell adhesion molecule as substrates of ADAM17 and ADAM10 by difference gel electrophoresis
Joan J. Bech-Serra et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Review - Mass spectrometry and protein analysis
B Domon et al.
SCIENCE (2006)
Towards third generation matrix metalloproteinase inhibitors for cancer therapy
CM Overall et al.
BRITISH JOURNAL OF CANCER (2006)
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin et al.
NATURE (2006)
Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF
WW Wu et al.
JOURNAL OF PROTEOME RESEARCH (2006)
Degradomics: Systems biology of the protease web. Pleiotropic roles of MMPs in cancer
CM Overall et al.
CANCER AND METASTASIS REVIEWS (2006)
Tumour microenvironment - Opinion - Validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy
CM Overall et al.
NATURE REVIEWS CANCER (2006)
An integrated mass spectrometry-based proteomic approach -: Quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network
C Guerrero et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
Shao-En Ong et al.
NATURE PROTOCOLS (2006)
Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization
Lucy McDonald et al.
NATURE PROTOCOLS (2006)
An optimized strategy for ICAT quantification of membrane proteins
C Ramus et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
Activity-based proteomics: enzymatic activity profiling in complex proteomes
H. Schmidinger et al.
AMINO ACIDS (2006)
Targeting proteases: successes, failures and future prospects
Boris Turk
NATURE REVIEWS DRUG DISCOVERY (2006)
Emerging roles for ectodomain shedding in the regulation of inflammatory responses
Kyle J. Garton et al.
JOURNAL OF LEUKOCYTE BIOLOGY (2006)
Positional proteomics: selective recovery and analysis of N-terminal proteolytic peptides
L McDonald et al.
NATURE METHODS (2005)
Proteomic analysis of sera from hepatocellular carcinoma patients after radiofrequency ablation treatment
T Kawakami et al.
PROTEOMICS (2005)
Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis
P Van Damme et al.
NATURE METHODS (2005)
ADAM-mediated ectodomain shedding of HB-EGF in receptor cross-talk
S Higashiyama et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2005)
Carbon source-dependent assembly of the Snf1p kinase complex in Candida albicans
C Corvey et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Shedding light on ADAM metalloproteinases
APJ Huovila et al.
TRENDS IN BIOCHEMICAL SCIENCES (2005)
Homodimerization of calpain 3 penta-EF-hand domain
R Ravulapalli et al.
BIOCHEMICAL JOURNAL (2005)
Proteinaceous cysteine protease inhibitors
G Dubin
CELLULAR AND MOLECULAR LIFE SCIENCES (2005)
The ADAMTS metalloproteinases
S Porter et al.
BIOCHEMICAL JOURNAL (2005)
A modified tandem affinity purification tag technique for the purification of protein complexes in mammalian cells
R Drakas et al.
PROTEOMICS (2005)
A proteomic approach to identify substrates of matrix metalloproteinase-14 in human plasma
IK Hwang et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2004)
A proteomic approach for the discovery of protease substrates
AJ Bredemeyer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry
J Vasilescu et al.
PROTEOMICS (2004)
Activity-based probes for the proteomic profiling of metalloproteases
A Saghatelian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
PL Ross et al.
MOLECULAR & CELLULAR PROTEOMICS (2004)
Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics
M Brand et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
Developing photoactive affinity probes for proteomic profiling: Hydroxamate-based probes for metalloproteases
EWS Chan et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Matrix metalloproteinase-2 cleavage of adrenomedullin produces a vasoconstrictor out of a vasodilator
A Martínez et al.
BIOCHEMICAL JOURNAL (2004)
Mechanisms of soluble cytokine receptor generation
SJ Levine
JOURNAL OF IMMUNOLOGY (2004)
Protease degradomics:: mass spectrometry discovery of protease substrates and the CLIP-CHIP, a dedicated DNA microarray of all human proteases and inhibitors
CM Overall et al.
BIOLOGICAL CHEMISTRY (2004)
Processing of the dual targeted precursor protein of glutathione reductase in mitochondria and chloroplasts
C Rudhe et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Stereoselective synthesis of photoreactive peptidomimetic γ-secretase inhibitors
J Chun et al.
JOURNAL OF ORGANIC CHEMISTRY (2004)
Characterization of the distinct collagen binding, helicase and cleavage mechanisms of matrix metalloproteinase 2 and 14 (gelatinase A and MT1-MMP) - The differential roles of the MMP hemopexin C domains and the MMP-2 fibronectin type II modules in collagen triple helicase activities
EM Tam et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Membrane protease proteomics: Isotope-coded affinity tag MS identification of undescribed MT1-matrix metalloproteinase substrates
EM Tam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Multifunctional peptides encrypted in milk proteins
H Meisel
BIOFACTORS (2004)
Functions of propeptide parts in cysteine proteases
B Wiederanders et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2003)
Sequential cloned gene integration in the yeast Kluyveromyces lactis
YCM Wang et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2003)
ADAMs: modulators of cell-cell and cell-matrix interactions
JM White
CURRENT OPINION IN CELL BIOLOGY (2003)
Progranulin (granulin-epithelin precursor, PC-cell-derived growth factor, acrogranin) mediates tissue repair and tumorigenesis
ZH He et al.
JOURNAL OF MOLECULAR MEDICINE-JMM (2003)
X-ray structure of the Ca2+-binding interaction domain of C1s
LA Gregory et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
High binding capacity of cyclophilin B to chondrocyte heparan sulfate proteoglycans and its release from the cell surface by matrix metalloproteinases - Possible role as a proinflammatory mediator in arthritis
F De Ceuninck et al.
ARTHRITIS AND RHEUMATISM (2003)
Human and mouse proteases:: A comparative genomic approach
XS Puente et al.
NATURE REVIEWS GENETICS (2003)
The crystal structure of the proprotein processing proteinase furin explains its stringent specificity
S Henrich et al.
NATURE STRUCTURAL BIOLOGY (2003)
Biochemical analysis of the 20 S proteasome of Trypanosoma brucei
CC Wang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
K Gevaert et al.
NATURE BIOTECHNOLOGY (2003)
Mass spectrometry-based proteomics
R Aebersold et al.
NATURE (2003)
The study of macromolecular complexes by quantitative proteomics
JA Ranish et al.
NATURE GENETICS (2003)
Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC)
SE Ong et al.
JOURNAL OF PROTEOME RESEARCH (2003)
N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins
B Polevoda et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
An efficient protein complex purification method for functional proteomics in higher eukaryotes
D Forler et al.
NATURE BIOTECHNOLOGY (2003)
Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system
M Knuesel et al.
MOLECULAR & CELLULAR PROTEOMICS (2003)
Matrilysin shedding of syndecan-1 regulates chemokine mobilization and transepithelial efflux of neutrophils in acute lung injury
QL Li et al.
CELL (2002)
Catabolic response to stress and potential benefits of nutrition support
CJ Wray et al.
NUTRITION (2002)
Molecular determinants of metalloproteinase substrate specificity - Matrix metalloproteinase substrate binding domains, modules, and exosites
CM Overall
MOLECULAR BIOTECHNOLOGY (2002)
Strategies for MMP inhibition in cancer:: Innovations for the post-trial era
CM Overall et al.
NATURE REVIEWS CANCER (2002)
In situ activation of caspases and serine proteases during apoptosis detected by affinity labeling their enzyme active centers with fluorochrome-tagged inhibitors
J Grabarek et al.
EXPERIMENTAL HEMATOLOGY (2002)
Discovery of chemokine substrates for matrix metalloproteinases by exosite scanning: A new tool for degradomics
CM Overall et al.
BIOLOGICAL CHEMISTRY (2002)
Protease degradomics:: A new challenge for proteomics
C López-Otin et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2002)
Caspase processing and nuclear export of CTP:phosphocholine cytidylyltransferase α during farnesol-induced apoptosis
TA Lagace et al.
MOLECULAR AND CELLULAR BIOLOGY (2002)
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
SE Ong et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)
The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction
MH Glickman et al.
PHYSIOLOGICAL REVIEWS (2002)
Cancer therapy - Matrix metalloproteinase inhibitors and cancer: Trials and tribulations
LM Coussens et al.
SCIENCE (2002)
Interaction with glycosaminoglycans is required for cyclophilin B to trigger integrin-mediated adhesion of peripheral blood T lymphocytes to extracellular matrix
F Allain et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
A closer look at proteolysis and MHC-class-II-restricted antigen presentation
AM Lennon-Duménil et al.
CURRENT OPINION IN IMMUNOLOGY (2002)
Functional organization of the yeast proteome by systematic analysis of protein complexes
AC Gavin et al.
NATURE (2002)
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
Y Ho et al.
NATURE (2002)
Chemical approaches for functionally probing the proteome
D Greenbaum et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)
Extended peptide-based inhibitors efficiently target the proteasome and reveal overlapping specificities of the catalytic β-subunits
BM Kessler et al.
CHEMISTRY & BIOLOGY (2001)
Determination of protease cleavage site motifs using mixture-based oriented peptide libraries
BE Turk et al.
NATURE BIOTECHNOLOGY (2001)
The tandem affinity purification (TAP) method:: A general procedure of protein complex purification
O Puig et al.
METHODS (2001)
Membrane-bound transcription factors: regulated release by RIP or RUP
T Hoppe et al.
CURRENT OPINION IN CELL BIOLOGY (2001)
A comprehensive two-hybrid analysis to explore the yeast protein interactome
T Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Profiling serine hydrolase activities in complex proteomes
D Kidd et al.
BIOCHEMISTRY (2001)
Critical appraisal of the use of matrix metalloproteinase inhibitors in cancer treatment
S Zucker et al.
ONCOGENE (2000)
Structure of a serpin-protease complex shows inhibition by deformation
JA Huntington et al.
NATURE (2000)
Inflammation dampened by gelatinase A cleavage of monocyte chemoattractant protein-3
GA McQuibban et al.
SCIENCE (2000)
Epoxide electrophiles as activity-dependent cysteine protease profiling and discovery tools
D Greenbaum et al.
CHEMISTRY & BIOLOGY (2000)
Rapid and general profiling of protease specificity by using combinatorial fluorogenic substrate libraries
JL Harris et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Structural basis of the endoproteinase-protein inhibitor interaction
W Bode et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEIN STRUCTURE AND MOLECULAR ENZYMOLOGY (2000)
Tissue inhibitors of metalloproteinases: evolution, structure and function
K Brew et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEIN STRUCTURE AND MOLECULAR ENZYMOLOGY (2000)
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
P Uetz et al.
NATURE (2000)
Synthesis of positional-scanning libraries of fluorogenic peptide substrates to define the extended substrate specificity of plasmin and thrombin
BJ Backes et al.
NATURE BIOTECHNOLOGY (2000)
A preliminary study of CA15-3, c-erbB-2, epidermal growth factor receptor, cathepsin-D, and p53 in saliva among women with breast carcinoma
C Streckfus et al.
CANCER INVESTIGATION (2000)
分享论文
